XLOC_009218 (zgc:154093)


Basic Information

Item Value
gene id XLOC_009218
gene name zgc:154093
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 23693514 ~ 23699737 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018129
GCTTAAGAGGTTTATAACAACCCTTCCGAGAGCGCGCAGATAGAACAGCTTATCCACTTACATCCAGGAATAACCTACAAGAACAATCAAGGGTTTCATCGCAGATATCAAAGATCCGCTGTTGTGATGAAACCTTCCTGAGCCTCCTGAAGAGCTTTGAACATAAAGCAGGCCACTTCCACCTCCAACTGGAAGATTTAAAAGTCAAATAAAGGACACAACCCAACCGTAACGTATGAAAGAGCTAATATCAGACTGAGGACTTGGTTCCTCTTCATTTCGGCTACAAACACCAGCGCAGACATTTGACCCCGAATACTGGGAAACAGAATGCCAGCAAAGACACCCATCTACTTAAAGACATCGACACCAAAGCGAGGGAAGAAGCCCAAGATACGGGACGTTTTATCAGGTGATATGATAAGCCCGCCACTGGGTGATGTGCGCCACAGTGCCCATGTTGGGCCAGATGGAGAAGGGGACATGTTTGGTGATGTTGGGTTCTTGCGAGGCAAACTGGACATGCTTCCAGGTCTCAATCAAGCGCCCGGCTCCCGTTCTCACAGCATTGACAGAAGAATGGATGAGATCTTTGAGGTGAGTGGCAAAAGTCACACTTACCACCGAGGCCACCATAACTCACTCCTCAAAACCACCATCTCCATGCCGGTGTTCATGGCGCCCGTGCAGCCTCCTCCTAAACCTCCACGTCTGCATTTAGATGAGCAGCCTACTCCTGTTCACCACCAGCAGCAGAACCACCATCACAGCCCGCAGCAGCGCTCCATGTCTGTGTGTGAGGGCGGGATTGGGAAATGTCACGAGCTCACTCTGTCGGCCTCAATCCCAGTCTTGCCACACATGATGCCTTCCACGAGCTCCTTATCCGAGGCTTCATCAGACGACTCCATGTCTGAAGGCTGTGGTCCGTTAGATCCGAAGCGAGGCTTGAGTCTGGACTCTGATGCGGGACTGAGCAATGAGGACCTGCGAAGTGAACACTGCGAGTCTCCTGCTGTCTCTCCCAGCGTGTCCCGCTCAGAGTCTCTAATGGGTTTGGACCTGGATTTGGGGCCATCCATTTTGGAGGACGTTCTTAGGATCATGGACCGTTATAAGAGCATGGAGGAGAGACATGAGATATAAGGGGAATTCTTCAGATGCTAAAATATTTAATAGTGTCTAACTGCAGACTTGCATATGCAAGCTGGGacatgcaatctcagacacaatgcactcaatagagcTAGTGACGTCTTTGTGAGGAGTAAGGGTTAAGAGCGGGGATTAGGTGTGCGCTTCAAAAGCATCGCATCCAGCTCAGTTTGCATACGTTTGAAATTGCATCATGTCTGGTGTCAGCCATCTTGGTATTCCTGTTTTAAAGAACTTTGAATGGACTGGGATGTTAGCAAAATATCTGGTTGTGCCAGTAGAGTATTTTTATCCACATGCaattttcttcattcattcattcatttattcattttcaactgcttttctgggtcgcgggggcagcagccTTAAGgtcttccctctccccagacacttcctccagctcctccgtggggatcccgaggcgttcccaggccagccaagagacacagtccctccagcgtgtcctaggTCTTCCtcaaggcctcctcccggtgggacatgtctggaacacctccctaggtaggtgtccaggaggcatccgaaacagatgcccaagccacctcagctgacttctctcgatgtggaggagcagtggttctactccgagctcctcctggttgacagagctcctcaccctatctataagggtgaaCCCTGcaaccctgcgaaggaaactcattttggtaacttgtatccgagatcttgtcctttcggtcaggacccaaagctcatgaccataggtaagagtaggattgtagattgaccggtaaatcgagagctttgcctttcgactTAGCtacttctttaccacaacggacaagtacattgaccgcattactgctgccgctgcaccaatccgcctctctcatgctccatccttccctcactcgtgaacaaaaccccaagatgctTGAGCTCCTCTACCTGGGGtaaagactttcctccaacctgaagATGGCAAAACAactttttctggtggagcaccatggcctcggacttgaaAGTGCTGATTCAGATCCTAGATGCAATCATCTAAAACAGGCAATAAACTTTATAACTTCAACTCTGTCattgtaaaaatacagtgatcAGTTCATCTGCATAAGGTGAAGAGGTCATGACAGTAATGAACAGCATGATGAACGCTAACGCTATAACTGTGGATGGCATCACAAAAGCAGTGATGTGATGCTTTGGTCATTTTGACCCAATTGGATATGTTAAATAATCGAGCAttaaaatttgtttgtttttatatttgatgtTACTTATTAAGCTGCGTTTTACAGGGAAGGGAATTGGGATTTTGGCTCTGTAGTTATATCAGGAAGTTtgtcataaaggtttagaaagtATAGTTTTATTCTGTTGAGGTGAATATTGTCAAAGAATGACCCAAAATGgatttatacaaatattttaatatgtctAAACTGTGGTCTTTACCCGGCCTATGAGTACGAAGGAAATCACTTCATGAAGATGAATCTTTGTTAGggtgaaatactgtatattttattgcattgtaatatatgatttaaaaatgtttatgtaaataaaatatattatataaaa

Function

symbol description
zgc:154093 Predicted to be involved in Rho protein signal transduction; positive regulation of cellular component biogenesis; and regulation of cell shape. Predicted to be located in endomembrane system. Predicted to be active in cytoplasm; cytoskeleton; and plasma membrane.

GO:

id name namespace
GO:0031274 positive regulation of pseudopodium assembly biological_process
GO:0007266 Rho protein signal transduction biological_process
GO:0030838 positive regulation of actin filament polymerization biological_process
GO:0008360 regulation of cell shape biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-061103-517 Predicted to be involved in Rho protein signal transduction; positive regulation of cellular component biogenesis; and regulation of cell shape. Predicted to be located in endomembrane system. Predicted to be active in cytoplasm; cytoskeleton; and plasma membrane.

Ensembl:

ensembl_id ENSDARG00000055897

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018129 True 2733 mRNA 0.46 2 23693514 23699737

Neighbor

gene id symbol gene type direction distance location
XLOC_009217 ercc2 coding downstream 1155 23680018 ~ 23692359 (-)
XLOC_009216 ckmb coding downstream 46436 23643718 ~ 23647078 (-)
XLOC_009215 si:dkey-182i3.11 coding downstream 147062 23544431 ~ 23546452 (-)
XLOC_009214 hmbsb coding downstream 163569 23511407 ~ 23529945 (-)
XLOC_009213 abcg4b coding downstream 185300 23487730 ~ 23508214 (-)
XLOC_009219 zc3h4 coding upstream 9592 23709329 ~ 23721618 (-)
XLOC_009220 bbc3 coding upstream 45480 23745217 ~ 23761580 (-)
XLOC_009221 rad1 coding upstream 76680 23776417 ~ 23784600 (-)
XLOC_009222 tmem97 coding upstream 90320 23790057 ~ 23793641 (-)
XLOC_009223 si:ch211-167j9.5 coding upstream 107758 23807495 ~ 23814330 (-)
XLOC_009205 NA non-coding downstream 539254 23144954 ~ 23154260 (-)
XLOC_009204 BX572079.1 non-coding downstream 738382 22955017 ~ 22955132 (-)
XLOC_009203 CR388121.1 non-coding downstream 972633 22720765 ~ 22720881 (-)
XLOC_009202 NA non-coding downstream 1098629 22588504 ~ 22594885 (-)
XLOC_009200 CR936967.1 non-coding downstream 1432517 22260881 ~ 22260997 (-)
XLOC_009227 CU313324.1 non-coding upstream 459216 24158953 ~ 24159067 (-)
XLOC_009228 NA non-coding upstream 862084 24561821 ~ 24563061 (-)
XLOC_009230 NA non-coding upstream 892588 24592325 ~ 24618905 (-)
XLOC_009234 NA non-coding upstream 1201814 24901551 ~ 24927093 (-)
XLOC_009236 NA non-coding upstream 1268355 24968092 ~ 24974112 (-)

Expression


Co-expression Network