XLOC_009247 (si:dkey-54n8.4)


Basic Information

Item Value
gene id XLOC_009247
gene name si:dkey-54n8.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 25375923 ~ 25392589 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018178
gagagagagagagagagagagagagagagagttgtgttTCCTCGATCAGTTGCATCATCGTTTTGGTCCTGAAGGAGCCTCTTCCTGTCTGTCATCgcgatgaagatgatgatgatgctgttcGGCAGACGCAGGACACACGGGCACGCGTATGCCAGCTAAACGCTTGAATTGATCGTGACATTGTCGAATAAAGCAACTGTACATTTGCCGAAATAACGAAGGATTGACAATTGGTCTTTCACGTCAAAGCTCAGCCGGGGCAGATCCTTGTTTAAGTCTCGCTTGTATTGATCTTCCTTAAAGATGTCGTCATCCTATATGTTCATGGGTCGCTTGGTTGAAGGGCAGAGATGTGGAAGTGAAGGAGTCCGTTCATTCTCCTCATTATTATAACGCCTCGTCTGCTGGATAGTGATTTAAGAATGGAGAACACGGGGTCTCAGGTGGTTTCTCTGGAGCGGCAGGTGGAGAGTGTGGAGCGGAGCATTGTGTTCCTCCGGCAGGAGCAGCTCACTCTGCTGCATGGACTTCACCTGGAGATCCTCTCTCTTCAGAAACGCTGCACAGAACTCACACAAGACCTGAACATGAAGCCTCCAGGCAGGAGTCAAACTGAGGTGCTGGAAGAGGAGGAGCAGCTGGAGTCCCGCTGTCATGAAGTAGAGGAGCATCTGGAGGCGCAGCAGCTAATCCAGAGTGACCTGCACTGGGAGCTGAGCCAGAAATCAGTGCTGGTCGGTGCTCTCCGTGCCAGTCTGAAAGAGAAGGAGCGCCGATTCCTGGAGGAGTTGAAAAACCGCAGTCACAGGACCACAGTGCTCAACACGGAGCTGCAGAAGCAGACGGAGGCGGCAGCGTACCTGTCCTTCCAGCTGCACTCAGCCAAGCAGAAACTCCAGCAGCAGCGCAGAAGACCGCCCCAGCCTGGAGCAGACAGACCCCCGGTCCACCCTTCACCTCAAGCCAGCGCCTGCAGCCCAACTGTCATCAAACCCAAACGGAGGAGCTCTGGTAGATCCTCCACGCAGCTCCGCACTGAGCGCACCCGAGAATGTGTGCCACGCGAGAGGGTGACGGGCCCCGAAGAGCCAATGGCCATGCCTGACCCTGCTCTCTTCTTATACCCATACAGACACAGGTTACGCCCACCACATAGACACACCCTTCAGGAGGTGGAGGGGGAGGAGTCAGAGGAGCTGGATCAGGGGGCTTCAGTGAGCAGACTGGCAGCGACTGTTGCTAAAGCCACTGCTACTACTGCCTCCACAACAGAGAACAGCGACGAATGAGCGTTTCTCTTACGGTTCGCCTCAATgatctgcttgtttttttttatgatagtTGCACCTTGAGTCCCCTTGGGAGAACCTTTGCATTTTGACAGTGACAGAAATGTTTATATTTGCGATACGGTTAGctttttttacagtttgcacACACAGGGATAAATTGAGCTAGGAGAGATTTTTGCTTACCAATACCAACGCATGTTTATGTTGCTGTAAAGCATTTTTGTAATCAGAAACGACCATGAGGGCCTTGCTACACAAGCATAAAGTGCTCTGTAAGGCCTGTTTTATGCATCCTGcatttgttgcttttattttttttgctggttAAGTTAACAGATTACAACTTTCACACTGATATTTATGCGGTCCACGCTATAGATTGATGTTCTTTTTGTACTAAACAACTGTCTGTTGTTGCTGATAATCTACTCCTGCGATATGATTGTTGCTGATAAACACATTGCCATATCGATTGTCAAActatacattgtgcagccctagtgtgcaacattttttaaacagttaCCCATTTTACCCATTAAATTCAGCTTCCACAGAGATCACTGTAATACTTCCAACACCTTACTTTCCTTTGACTGACCACCTTAACAAGTTGTTACCAGGTGTGTGGAATTTTTTTAGGTACTTCTCATCAGTGCAAAGTTATGTCCATGTAAATCTAGAGAGGGTTGTGTGAATTGCATAATGTAATATTGGAAAACATGTGTCAGTGTCGAGGGCCgtggctctgcacagttttgctccaa

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-541 No description available

Ensembl:

ensembl_id ENSDARG00000090642

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018178 True 2062 mRNA 0.49 4 25375923 25392589

Neighbor

gene id symbol gene type direction distance location
XLOC_009246 cluha coding downstream 8614 25321572 ~ 25367309 (-)
XLOC_009245 pafah1b1a coding downstream 56260 25273185 ~ 25319663 (-)
XLOC_009244 mettl16 coding downstream 106895 25214171 ~ 25269028 (-)
XLOC_009243 mnta coding downstream 166615 25172671 ~ 25209308 (-)
XLOC_009242 vps53 coding downstream 222520 25100726 ~ 25153403 (-)
XLOC_009248 tlcd2 coding upstream 5538 25398127 ~ 25435085 (-)
XLOC_009249 hif1al coding upstream 109275 25501864 ~ 25527581 (-)
XLOC_009250 mmp20a coding upstream 153387 25545976 ~ 25556227 (-)
XLOC_009251 mmp20b coding upstream 164333 25556922 ~ 25571865 (-)
XLOC_009252 si:dkey-54n8.2 coding upstream 184220 25576809 ~ 25584888 (-)
XLOC_009236 NA non-coding downstream 401811 24968092 ~ 24974112 (-)
XLOC_009234 NA non-coding downstream 448830 24901551 ~ 24927093 (-)
XLOC_009230 NA non-coding downstream 757018 24592325 ~ 24618905 (-)
XLOC_009228 NA non-coding downstream 812862 24561821 ~ 24563061 (-)
XLOC_009227 CU313324.1 non-coding downstream 1216856 24158953 ~ 24159067 (-)
XLOC_009254 NA non-coding upstream 306223 25698812 ~ 25876120 (-)
XLOC_009256 CR848822.3 non-coding upstream 602391 25994980 ~ 25995095 (-)
XLOC_009257 CR848822.2 non-coding upstream 682774 26075363 ~ 26075480 (-)
XLOC_009258 NA non-coding upstream 724605 26117194 ~ 26183974 (-)
XLOC_009259 CU179658.2 non-coding upstream 882051 26274640 ~ 26274757 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000072_02140839_02148226 NA coding CI01000072 null 2140839 ~ 2148649 (+)