CI01000072_02140839_02148226


Basic Information

Item Value
gene id CI01000072_02140839_02148226
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 2140839 ~ 2148649 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000072_02140839_02148226.mRNA
GGATCACCGGTGGTCTCCCTGGAGCGGCAGGTGGAGAGTGTGGAGAGGAGCATTGTCTTCCTTAGACAGGAGCAGCTGTCTCTGCTGCATGGACTACACCTGGAGATCCTGACCCTCCAGAAACGCTGTACAGATGTGCAGGAGGAAGAGCAGCAGCTGGAAGCCCGTTGTCGGGAAGTGGAGGAGCATCTGCAGGAGCAGCAGCAGGTCCAGAGTGATCTGAGATGGGAGCTGAGCCAGAAGTCAGTGCTGGTGGGCGCTCTCCGTGCCAGTCTGAAGGAGAAAGAGCGCCGTTTCCTGGAGGAATTAAAACACCGCAGCCACAGAACCACTGCGCTCAACACCGAACTGCAGAAGCAGACAGAGGCCAGCGCCAGCAGCCCAACAGTGATTAAACCTAAGCGGCGGAGCTCGAGCCGGCCCTCCTCGCACCTCCGCACAGAGCGCGCCAGGGAGTGCGTGCCGCGTGAGAGGGTGACGGGCCCAGAGGAGCCCATGGCCATGCCTGACCCCGCCCTCTTCCTATACCCCTACAGACACAGATCCCGGCCCCGCCCACCACACAGACACGCCCTGCAGGAGGCAGATGGGGAGGAGTCAGAGGAGCTGGATCAGGGAGCTTCAGTAAGCAGACTGGCAACGACAGTAGCTAAAGCCACTGCGACCACGGCATCCACTACAGAGAACAATGCTGAATGAGTGTTTCTTTTACGGTTCACCTCAACGACCTACTTGTTTTTATGATATTTTCCCCTAAATTGCTGAATTGCACCTTGAGCCCCTTGGGAGAACTTTTGCATTATGACAGAAATGTTTATATTTGCAATACTGCTAGCTTTTTTTTCCTACAGTTTGCACATGCAGTGATGAATAGACAGAGGAGAGATTCTTGCTTACGCTCTTGTTAAACCAAAATTGATTATGTTTATGTTGCTGTAAAGCATTTTTGTAATCAAAAATGACCCCGAGGTCCTCAATACTGTTTCATGCATCCTGCATCTGCGGCGTGTAGTTTTTTTTTTTTTCACTGGCAATATTAAGAGTTTACAGCATTCACACTGACATTTATGCCACCCACACATTATATTGCTGTTTTATTCACAATACATTACAGGTCAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000072_02140839_02148226.mRNA True 1122 mRNA 0.51 3 2140839 2148649

Neighbor

gene id symbol gene type direction distance location
CI01000072_02109877_02133927 TLCD2 coding upstream 6810 2109877 ~ 2134029 (+)
CI01000072_02058184_02067046 HIF1AL coding upstream 73790 2057887 ~ 2067049 (+)
CI01000072_02033013_02040077 NA coding upstream 100114 2032977 ~ 2040725 (+)
CI01000072_02028275_02032319 MMP20B coding upstream 108136 2027876 ~ 2032703 (+)
CI01000072_02016536_02023336 NA coding upstream 117478 2016422 ~ 2023361 (+)
CI01000072_02163279_02183332 CLUH, CLUHA coding downstream 14630 2163279 ~ 2183481 (+)
CI01000072_02209186_02258457 LIS1B, LIS1A, PAFAH1B1.L, PAFAH1B1A, PAFAH1B1B, PAFAH1B1 coding downstream 60537 2209186 ~ 2258457 (+)
CI01000072_02282323_02282873 NA coding downstream 133674 2282323 ~ 2282992 (+)
CI01000072_02290646_02296564 MNTA coding downstream 141765 2290414 ~ 2296761 (+)
CI01000072_02326222_02344508 VPS53 coding downstream 177573 2326222 ~ 2345441 (+)
G284789 NA non-coding upstream 72479 2023415 ~ 2068360 (+)
G284876 NA non-coding upstream 173526 1967047 ~ 1967313 (+)
G284745 NA non-coding upstream 201521 1937487 ~ 1939318 (+)
G284873 NA non-coding upstream 215650 1924112 ~ 1925189 (+)
G284872 NA non-coding upstream 217274 1923253 ~ 1923565 (+)
G284785 NA non-coding downstream 88468 2237117 ~ 2242589 (+)
G284787 NA non-coding downstream 216228 2364877 ~ 2365224 (+)
G284901 NA non-coding downstream 222032 2370681 ~ 2371362 (+)
G284907 NA non-coding downstream 232405 2381054 ~ 2381430 (+)
G284909 NA non-coding downstream 233817 2382466 ~ 2382677 (+)
G284742 NA other upstream 155699 1981530 ~ 1985140 (+)
CI01000072_00338411_00351144 NA other upstream 1789551 337071 ~ 351288 (+)
G285428 NA other downstream 1821608 3970257 ~ 3976214 (+)
G286470 NA other downstream 2020455 4169104 ~ 4175651 (+)
CI01000072_04225105_04268007 SIK2B, SIK2 other downstream 2076189 4224789 ~ 4268148 (+)
CI01000072_04338747_04342064 SDHD other downstream 2190070 4338719 ~ 4343266 (+)
CI01000072_04757636_04762507 NA other downstream 2611662 4757583 ~ 4762510 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009247 si:dkey-54n8.4 coding NC_007126.7 CM002899.2 25375923 ~ 25392589 (-)