RNA id: CI01000072_02140839_02148226.mRNA


Basic Information

Item Value
RNA id CI01000072_02140839_02148226.mRNA
length 1122
RNA type mRNA
GC content 0.51
exon number 3
gene id CI01000072_02140839_02148226
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 2140839 ~ 2148649 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGATCACCGGTGGTCTCCCTGGAGCGGCAGGTGGAGAGTGTGGAGAGGAGCATTGTCTTCCTTAGACAGGAGCAGCTGTCTCTGCTGCATGGACTACACCTGGAGATCCTGACCCTCCAGAAACGCTGTACAGATGTGCAGGAGGAAGAGCAGCAGCTGGAAGCCCGTTGTCGGGAAGTGGAGGAGCATCTGCAGGAGCAGCAGCAGGTCCAGAGTGATCTGAGATGGGAGCTGAGCCAGAAGTCAGTGCTGGTGGGCGCTCTCCGTGCCAGTCTGAAGGAGAAAGAGCGCCGTTTCCTGGAGGAATTAAAACACCGCAGCCACAGAACCACTGCGCTCAACACCGAACTGCAGAAGCAGACAGAGGCCAGCGCCAGCAGCCCAACAGTGATTAAACCTAAGCGGCGGAGCTCGAGCCGGCCCTCCTCGCACCTCCGCACAGAGCGCGCCAGGGAGTGCGTGCCGCGTGAGAGGGTGACGGGCCCAGAGGAGCCCATGGCCATGCCTGACCCCGCCCTCTTCCTATACCCCTACAGACACAGATCCCGGCCCCGCCCACCACACAGACACGCCCTGCAGGAGGCAGATGGGGAGGAGTCAGAGGAGCTGGATCAGGGAGCTTCAGTAAGCAGACTGGCAACGACAGTAGCTAAAGCCACTGCGACCACGGCATCCACTACAGAGAACAATGCTGAATGAGTGTTTCTTTTACGGTTCACCTCAACGACCTACTTGTTTTTATGATATTTTCCCCTAAATTGCTGAATTGCACCTTGAGCCCCTTGGGAGAACTTTTGCATTATGACAGAAATGTTTATATTTGCAATACTGCTAGCTTTTTTTTCCTACAGTTTGCACATGCAGTGATGAATAGACAGAGGAGAGATTCTTGCTTACGCTCTTGTTAAACCAAAATTGATTATGTTTATGTTGCTGTAAAGCATTTTTGTAATCAAAAATGACCCCGAGGTCCTCAATACTGTTTCATGCATCCTGCATCTGCGGCGTGTAGTTTTTTTTTTTTTCACTGGCAATATTAAGAGTTTACAGCATTCACACTGACATTTATGCCACCCACACATTATATTGCTGTTTTATTCACAATACATTACAGGTCAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322763 lncRNA upstream 72479 2023415 ~ 2068360 (+) True G284789
TU322858 lncRNA upstream 173526 1967047 ~ 1967313 (+) True G284876
TU322719 lncRNA upstream 201521 1937487 ~ 1939318 (+) True G284745
TU322851 lncRNA upstream 215650 1924112 ~ 1925189 (+) True G284873
TU322850 lncRNA upstream 217274 1923253 ~ 1923565 (+) True G284872
TU322759 lncRNA downstream 88468 2237117 ~ 2242589 (+) True G284785
TU322761 lncRNA downstream 216228 2364877 ~ 2365224 (+) True G284787
TU322885 lncRNA downstream 222032 2370681 ~ 2371362 (+) True G284901
TU322892 lncRNA downstream 232405 2381054 ~ 2381430 (+) True G284907
TU322894 lncRNA downstream 233817 2382466 ~ 2382677 (+) True G284909
CI01000072_02109877_02133927.mRNA mRNA upstream 6810 2109877 ~ 2134029 (+) True CI01000072_02109877_02133927
CI01000072_02058184_02067046.mRNA mRNA upstream 73790 2057887 ~ 2067049 (+) True CI01000072_02058184_02067046
CI01000072_02033013_02040077.mRNA mRNA upstream 100114 2032977 ~ 2040725 (+) True CI01000072_02033013_02040077
CI01000072_02028275_02032319.mRNA mRNA upstream 108136 2027876 ~ 2032703 (+) True CI01000072_02028275_02032319
CI01000072_02016536_02023336.mRNA mRNA upstream 117478 2016422 ~ 2023361 (+) True CI01000072_02016536_02023336
CI01000072_02163279_02183332.mRNA mRNA downstream 14630 2163279 ~ 2183481 (+) True CI01000072_02163279_02183332
CI01000072_02209186_02258457.mRNA mRNA downstream 60537 2209186 ~ 2258457 (+) True CI01000072_02209186_02258457
CI01000072_02282323_02282873.mRNA mRNA downstream 133674 2282323 ~ 2282992 (+) True CI01000072_02282323_02282873
CI01000072_02290646_02296564.mRNA mRNA downstream 141765 2290414 ~ 2296761 (+) True CI01000072_02290646_02296564
CI01000072_02326222_02344508.mRNA mRNA downstream 177573 2326222 ~ 2345441 (+) True CI01000072_02326222_02344508
TU322715 other upstream 155699 1981530 ~ 1985140 (+) True G284742
TU321805 other upstream 1789551 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU323494 other downstream 1821608 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 2020455 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 2020455 4169104 ~ 4175651 (+) True G286470
TU324705 other downstream 2076189 4232318 ~ 4232421 (+) False G286474
TU324694 other downstream 2190070 4338719 ~ 4343183 (+) False CI01000072_04338747_04342064

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00018178 True 2062 mRNA 0.49 4 NC_007126.7 25375923 ~ 25392589 (-)