RNA id: TU322759


Basic Information

Item Value
RNA id TU322759
length 5166
lncRNA type intronic
GC content 0.38
exon number 2
gene id G284785
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 2237117 ~ 2242589 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTTCATTTTTGGGTGAACTAACCCTTTAATATCAGCTATTTATCAGTTATCAGTCATTATAGTAACACATTATCAACAATCTGTATTTTAATTTAAAGGCGCCCTGTTGTGAAAATCAAGTTTTTAATATTGTTTATTTGTCTATGTGGTGTTTTTAATATTATTTAATATTATTTGTTTAATTTATCACAGTGCATCTTTAATTCAGTATGTGGCATCCAGATATTGTGTTTTTGTTTTGTGTTTAAGATGTTTTGTGTACAAATATACCTTTTGGCAGTCTGATTAAATAATGAGGCATGAGTTATTATCTCTGGTTGCTTCAACATGTTGGTGGTAGAAGGTAGAGTCAAATGCATTTCATTGTGTGATACAGTATTTTATGTTTGTTTGTTTTTTTTCTCTGTACTTTTTGGTGAATTAAATGAAAGTCATAAAGAAAATATTTCAGGAATAGTCATAGTAGTATATTAGCATCATATTCTGTTCATAGCCCGTCTCTCATTTTTTCTTGTGGTATGCTTAGAGATTCACTTAAAAAAACCCAACTGATCTGGTATTTAACCGAAACTTCACAAGTTAGCCTTGCAACTTAGTCTTAAGATGTGGTTTTTGCTGAAATATTTAAGTCTTTTATATATACGAGTTATCATTAGCTTCTCCTATTCCTCGTTTCAGACTCCAGACATTGCCACGCTGGTTAGATAAGCTTCCTTCCATTTCTTTCCTAAGTCTCTTATGCCACAGTTTGGAGGATAGGGTTAATCTGGAAAGAGACACTCACTGAGAGGGATATGGGTACGACAAGGAATCCTCTCCCCTTCATTTTTCTTCTGCTGCCACTGGAGGAGAAAGATATGAAAGGAGAGGAAAGATTTGGGGCGCAGATGTCATCCAGAGAGAGATTGGATTAGAAGGCATGAACCAGAGAGGCGACGTCCATCAGTGGCTCGTGGACAACCTGGAAGGAACTAGGGAGCATTAATAATTAAGACTACAGGGTGACATTTAAAGAAAATATGAAACCCAAAAATGAATGTCCTTTATTAACTCTCATGTTGTTCCAAACCTATACTGTATAAACGTTTGGGGTTGGTAAGATGTTTTTGAAAGAAGTCTTGCATGCTGCGTTTATTTAATAAAAAATAGAGTAAAACAATACAATTATTTTTCAGTATTGACAAAATTATTTTCTATTTTAAAATATTATGAAGTGTAAATTATTCCTGTGATGGCAAAGCTGGGTTTTCAGCAGCCACTTACTCCTTAGTTCACTTTCAAATGAAAAAGCCTTGAGGGTGAGTAAAGCTTGGGCTAATTTTCATTTGAAAGTGAACCAATCCTTTAAGTGTCACATGATCATTTTGATATGCTGATTTGGTGCTCAAGAAAAATTCTTATCAAACATTTGTGCTGCTTAATGTTTATTCTTAATATTTTTCTGGATTATTTAATGAATAGAAAGAGGAAATGACACTGTAAGGAATAAAATAATACAAAAAGATTTTTTTTATAATTTTTTTTTTTTTGCCCATACAGCCCATAATCCATCAATCTCCAAAAAGGACAAAAAAAAAAAAAGGCTGGTCCATACAGCTTCTGCACTTTTCTGAAGCCTCTGAAGCCATTCAAAAGCTTTGCATGATGAAGACCAAACTTTAAATTCACTAGTAATCCTCACCTCCAGTACTGATCTTCAAATCCGGTTTGATGTCATGTGACATTTGCTGTTATTGATGTTCTTCCTGTCTGATATTTGGATTGGTAGTTGCAGCAGAGATTAAGTAATTAACAGCAATATAGTGCACATATTGTATGGACCACTATGCATTCATGGTATTTTATGTGGAGATTCTAAGAAATTGTTTTTTGTGTGTTCAACAAGAAAAGAAAAGAAAGGAAAAGAAAAGAAAAGAGGTTTAAAATTGCATGAAGGTGGTTAAACATGACAGAATATTCATTTTGGGGCAAACTATCCCTTTAATTTCATTCTGTTGTGAAAATAAGACTATATATAATCTTTTCTAGCTGCAGTAAAGGTGTAGCATTAATCTCTGCAGCCTGGCAGACAGTGAGTTGCATTATTGATGCAGCGGAGGGCTGTCTATGGTGAGGGCCCTCTGCTGAAATGTTGGGCGTAATTGCGGGGTTCAGCCTCAGCTCGCTTACAAATGAGATGCGGGGACATGGAGGGGGGCGTCTTGCATTGCTCATCCTCTCTGCTGCCTGCTACAGGGCTAATCCTAAATTTAAACTCACGCTCCCCTTGTTGGGGTGTCAGTTTCTGACACATGATGGCATTAGCCATCAGCTTGTCTTAGGAATAGAGCAGCCAAAAATGTAAATTCTGTCATCATTTACTCACCCTCATGTCGTTACAAACCTGTATAACTTTCTTCTGTGGAACGCAAAAGGAAAAATTTAGCAGAATGTCCAAACTGCTCTTTTCTATACAGTGAAAGTTAAGGTGGCCACGATTGTTAAAGTCCCCCTGAAATCAAAATTTTCTAGCTTTTAGTATGAATATGTTTACCTTGAGGTTATGAATAGGCTGGTGTGTTCCAAAACAATGACAAAATTCGCATTTAGGAGATATAAGCATTCAAAACTTAAAGTCTCTCACTTCCGCTAAAATGAATGACGGATTTTCATGACATCACACTTCAGCTTCTCGTCAGATCTTCTGTCCAATCAAATGCTCTCTAGAATCTGAAGCCCCGCCCCCTCCTACACTATAAACAGACGTTGAAGCTGCGGCTGAAATCGATCATTTGTTCACATATTTACTAGTTTCTATATGGTGAATGGCATAGTGCACTATATAGAGAATAGGGAACGGTTCAGACAGTGTAAATGCTTTCCATTGATGTGAATGAAGTCCGTGTTAGTGTCACGTGAACTGCCGCAGCGCGAGCACTGTCTGCTCTGGTCCAGAGACACGAGAACACAGAGCGGATCATATCTGCGGACCGCGAGTCGGCACAGACCACAAAATGTATCGGACCCATTTGAATTATGCACAGAATGCTGTATTTTAAAGTAATATAGAGGGCATTAGGAGGAGAAACGGTTAGAGATTAGAAGGAAACAGAGGTTTTACCGAGTTTAACGGCTCTGGCCGAGCTGTGGTATAAATGAAACTCTATTGGCTATTTTTAAAAAGGGGCGGAGCTGTTCGATATGTCCCGCCCTGTCTTCATGTTTCAGTTGAAATTACATCAACACACTGAATAATGCTGCGTGTTCCAAGACACTTAAGTGGGCCTTTAAGTAAGATTTTAAGGGAATAATGACTTTCATTCTATTCATTACACACAACTATTGAATGGCGTCAGAAGTCTTTGAATACAATTCATAAGTTGCATGGACCACTTTTATGATGCTCTTATGGGCTTTTACGCCCTTTTTGGAGTTTGACAGCCTCTGGTCACCATTCTCTTTTGTATGAAAAAGAGCAGCTTGAACATTCTTCAAATTATCTTTTGTTTTCCACAGAAGAGAGTCATAGAGGTTTGGATCGACGTGATAATGAATAATAAAGAATTTATTTTAAATAATGTTATTGCAGTTTGCCTTTAGTTTCTACTTTTCAAAATTTCAGAAACCATACTCTTGTAATCTCAAATCTCAGAGGTGAACGTCCCCAGGATATTCGCCATGCTCGTGTTTACTGCAGTGTTAAGTTGAAGTGAGATCCTGGTCGACTGGAGATTTGACATGCTGACAAAACCAAGGAAAACCTGACAGTTGGTGGAACGTCAATCCTCATAAGACCACTCGGCTCTCCATTATCTTATTAAAACAGCAATGATCTTACAGAATGCAGCAAAAAGCTGTGGAGTGTGTTCAGCATCCATGCTTTGTTTGCTAATGGTCGGGTTTGGAAGCATTTGAGTTCGGGGGATTGAAACTTGGCTAAACAGAGCTGTAGAGGTGACCTTGTGATGCTGATGATGGTGCTGATGGGTAGACCCATGCTGTGCTGTTGGGTTAGTATGATTGGTTAGAACAGTGGTTTTGCTTCAGGACTAAGAAGTATTAAAATGTTTGTGTAGTTTTTGGTTTGCACCCTTTCAGATATGAACCTCCTTTAGCGTGACTGCAATATTTGTTATTTTTTTTGTGATCTTCGGACACATCTCTTTCTGAATCTTCTAATTTGTACCTGCTAAACCATCCTATTTCAGCTTATAGTATGTTTTTCATCGTTCATTCCAGTCCGTGTCCTTGAGTCAGAGGGTTTCAGTTTCTGAGTTTCTCATCCGATCTACCCATATACACACCCAAATCACGTCAGCATCATTGTCCTCTCACACACTAACACACATCCACACCGCTCGTGCTCTACTAACACACACTTCTCTGCGGGGCGGGTTAGCCGCTCACATGCGCTATAGCGGTTACTGTGGAGACGGCTGGGCTGCGGCACTTGGTGTTCGTCCTGTGAGCCGAACGATTCACATGGAGGCTAAAAATAGAGGGCAGGTTAACGGCTCTCGCTGCCTCATCCTCTGCACACTGATTATGACCTGACGGATGCAAGGTCAGCCACAGTTACACTGGATCATTTACACACTCTGTGAGGACCAGATGAGCTGCTGGGTCTCCATTATGTCATATATGGCCCTCTTTGTAAATTCTTCACCGAGCTTTCATTTTATTTACTGTCGACATTTGTGTTTCATGAAGGCTTTATTATTGTAGTTAATCCTGTTAAGTGGTAACCATGGAAACCTTCTACGACATCCATATTTAAATTTAATTCCCAAGGTCACATTTTCAAGATTAATCGTCTGGATTGGAAAACTGGATTAATTAGGGCTAATGTGTTAATAAATTATAAAGATAGAAGTGAATTGGATTTTTCACATGACAAATGTTTCCTCTCTTGTGTTGTGCTCTCATAATTTATTCCAACACCGTGTTTGCAGTGTTAAAGGCTGTGGTCCACTGATGTGCTTTAATGGCTGATGCCGGTATCCAAAGAAGTATATGGCTAATGACCAGTATTGATAAAGCCTTTATGTACAGTGGACCACAAAATCTAGTCAAAGAGACCACTAGTTAAAATGCTTCTGTTTAATTACCATTTATTCTCTTTGTTTTAATTTATTGGATTATATTTTCTGCAAACAATGTGAGTATATTATGCACCACAGTGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322763 lncRNA upstream 168757 2023415 ~ 2068360 (+) True G284789
TU322858 lncRNA upstream 269804 1967047 ~ 1967313 (+) True G284876
TU322719 lncRNA upstream 297799 1937487 ~ 1939318 (+) True G284745
TU322851 lncRNA upstream 311928 1924112 ~ 1925189 (+) True G284873
TU322850 lncRNA upstream 313552 1923253 ~ 1923565 (+) True G284872
TU322761 lncRNA downstream 122288 2364877 ~ 2365224 (+) True G284787
TU322885 lncRNA downstream 128092 2370681 ~ 2371362 (+) True G284901
TU322892 lncRNA downstream 138465 2381054 ~ 2381430 (+) True G284907
TU322894 lncRNA downstream 139877 2382466 ~ 2382677 (+) True G284909
TU322916 lncRNA downstream 172711 2415300 ~ 2415510 (+) True G284929
CI01000072_02163279_02183332.mRNA mRNA upstream 53636 2163279 ~ 2183481 (+) True CI01000072_02163279_02183332
CI01000072_02140839_02148226.mRNA mRNA upstream 88468 2140839 ~ 2148649 (+) True CI01000072_02140839_02148226
CI01000072_02109877_02133927.mRNA mRNA upstream 103088 2109877 ~ 2134029 (+) True CI01000072_02109877_02133927
CI01000072_02058184_02067046.mRNA mRNA upstream 170068 2057887 ~ 2067049 (+) True CI01000072_02058184_02067046
CI01000072_02033013_02040077.mRNA mRNA upstream 196392 2032977 ~ 2040725 (+) True CI01000072_02033013_02040077
CI01000072_02282323_02282873.mRNA mRNA downstream 39734 2282323 ~ 2282992 (+) True CI01000072_02282323_02282873
CI01000072_02290646_02296564.mRNA mRNA downstream 47825 2290414 ~ 2296761 (+) True CI01000072_02290646_02296564
CI01000072_02326222_02344508.mRNA mRNA downstream 83633 2326222 ~ 2345441 (+) True CI01000072_02326222_02344508
CI01000072_02348164_02349155.mRNA mRNA downstream 105043 2347632 ~ 2349767 (+) True CI01000072_02348164_02349155
CI01000072_02351008_02356285.mRNA mRNA downstream 108419 2351008 ~ 2357080 (+) True CI01000072_02351008_02356285
TU322715 other upstream 251977 1981530 ~ 1985140 (+) True G284742
TU321805 other upstream 1885829 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU323494 other downstream 1727668 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 1926515 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 1926515 4169104 ~ 4175651 (+) True G286470
TU324705 other downstream 1982249 4232318 ~ 4232421 (+) False G286474
TU324694 other downstream 2096130 4338719 ~ 4343183 (+) False CI01000072_04338747_04342064

Expression Profile