RNA id: CI01000072_02348164_02349155.mRNA


Basic Information

Item Value
RNA id CI01000072_02348164_02349155.mRNA
length 1729
RNA type mRNA
GC content 0.47
exon number 3
gene id CI01000072_02348164_02349155
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 2347632 ~ 2349767 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTAAAGGGAGGGCCTCCTGACTCTCTCTAATTGGCACTCCAATCAGCAGTGGGAGGCAGTTTTAAAGGCGTCTCCCCTCTTGCAGGCGCTTGTAAAACAATGAACGTCTTTGAGTGTGGACAATTTTGAATGCAGGCAGGCTGACAAGCTGGTAAACTTGCGTTACCTTCCCCGGCAATGACCCCCTGACTGAATGCGCTCAAGAGCGAAGTGAGAGAAAGTTTCCATTTTGCTCAGTTTTTATAAAGCCATTTAAACTTGGCGACAACAAACAAGCTTCTTCAGATCTGTGTTTCAAAGTCTCGGAGGAAAACGGGAGCGGTGAGCCAGAGCCACTAAACGGATTATCGACGATCATTCACGGCATCGCACAGCTGGTTTACTTTATACGAACCGCTCGGATCTCTTTTAGACCGGGGTTGCCGGCAAGATCAACAGAGAAGGACAATTTTGCACATAATTCGATTTAATTGCATTGTTAGGAGAGCTTGTGGAACTTGCCCGCAAGTGTTGAGCAACTTTTAAAAGCGATGGTGGGAAGACTGAACTTGCGGAATGTGTCTGACGACGATCCGCTGGATATGAATTACAAAGCTGACCGGCCGCTGGACAGTCCGGACTCCGGTCTGCCTCCGAGTCCGAGCCCGAGCGTCTGGTTACTGCAGGGTGCCGGGGCTGGAACCCCGATTACTGAAGACGAGAGCAGAGGAACAGCTGTGGTTCCTAATAATCGCCAATTGCATGCGTTGTCCTATGGTGAAGGAATTGAACTCGATCCTCTGCCACTAAAAGAAATAAGATACACGTCGTCAGTGCGTTATGATTCAGATCGGCACTTCATCCAGGATGTGACCCTGCAGCCCAAGGGTTTGGGTCTGGAGATGTGCAGCCAGACAGTGTTGGCCCTGCCTCAAAGCACCTGGAGACATTACAAGACCCAGCTGGAGTTTCAGCCCCGTCAGCGTGTGCAGCGCTACCAGAGCACCACCATAGTGTACCCTAAACACACCCGGACCTTCTACACCACCCAGCTCAATTATGACGGGCACAAGTTGACCAAGCGCTTCTTCTCTGCTGTAGAGCTGCAGGCTTCTGATTGCAAGGCTGGTCTTTGAAAGACACACGGGCATCTGTGCCTGACATTACGCCCATATGTACCAATTATAAACCACCGCCTGCATTCATTGAGTCCCAAGAGAGGGGGGAAAAAGGAAACTCGGACTGAAATTGTTGCCAGTTGGAAAGGGGTTCCCAAGACAGACGTGCGGTTTTAGTGAGTTTAAGGCTGGAGGAGAGTAAGCAACTGTGTTGCGGTGTTTTTAAGGTTTGGTTAGAAGCGGCATATGGAGGATTGGATGGTTTTCTCCATCAGTGCTCAGTGGTAGTGTACAACAATGGGTTTAACTGTATGTAGAAATGTGGTTGATTTATTTAATAGTGAGATTCAAGTTTCAGATATTCTGCTCTGATCTTGGACCTTCACTGGTTTGAAAGGTTAGATTTGATGTTCAACTAGGACACATAGTTGGCCATAGAGAAATATGGGATGTACTAGAGTGCAAACTGATTTTTCCCACCATTAATTGTGTATTAGAATAACAAAATAGTGTATTTTAGGATTGGGATGCAAAGTTGGAGCTGCCGCACCATATATTTAATGTGTTTCACACTTCACTGAGATCTAGAAGGGAAAAATTCATATATTAGGGAGTAAAGGGTTTTCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322759 lncRNA upstream 105043 2237117 ~ 2242589 (+) True G284785
TU322763 lncRNA upstream 279272 2023415 ~ 2068360 (+) True G284789
TU322858 lncRNA upstream 380319 1967047 ~ 1967313 (+) True G284876
TU322719 lncRNA upstream 408314 1937487 ~ 1939318 (+) True G284745
TU322851 lncRNA upstream 422443 1924112 ~ 1925189 (+) True G284873
TU322761 lncRNA downstream 15110 2364877 ~ 2365224 (+) True G284787
TU322885 lncRNA downstream 20914 2370681 ~ 2371362 (+) True G284901
TU322892 lncRNA downstream 31287 2381054 ~ 2381430 (+) True G284907
TU322894 lncRNA downstream 32699 2382466 ~ 2382677 (+) True G284909
TU322916 lncRNA downstream 65533 2415300 ~ 2415510 (+) True G284929
CI01000072_02326222_02344508.mRNA mRNA upstream 2191 2326222 ~ 2345441 (+) True CI01000072_02326222_02344508
CI01000072_02290646_02296564.mRNA mRNA upstream 50871 2290414 ~ 2296761 (+) True CI01000072_02290646_02296564
CI01000072_02282323_02282873.mRNA mRNA upstream 64640 2282323 ~ 2282992 (+) True CI01000072_02282323_02282873
CI01000072_02209186_02258457.mRNA mRNA upstream 89175 2209186 ~ 2258457 (+) True CI01000072_02209186_02258457
CI01000072_02163279_02183332.mRNA mRNA upstream 164151 2163279 ~ 2183481 (+) True CI01000072_02163279_02183332
CI01000072_02351008_02356285.mRNA mRNA downstream 1241 2351008 ~ 2357080 (+) True CI01000072_02351008_02356285
CI01000072_02390649_02398813.mRNA mRNA downstream 39414 2389181 ~ 2399224 (+) True CI01000072_02390649_02398813
CI01000072_02422050_02429020.mRNA mRNA downstream 68684 2418451 ~ 2429431 (+) False CI01000072_02422050_02429020
CI01000072_02432156_02442588.mRNA mRNA downstream 82321 2432088 ~ 2442817 (+) False CI01000072_02432156_02442588
CI01000072_02452424_02456657.mRNA mRNA downstream 101925 2451692 ~ 2456811 (+) True CI01000072_02452424_02456657
TU322715 other upstream 362492 1981530 ~ 1985140 (+) True G284742
TU321805 other upstream 1996344 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU323494 other downstream 1620490 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 1819337 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 1819337 4169104 ~ 4175651 (+) True G286470
TU324705 other downstream 1875071 4232318 ~ 4232421 (+) False G286474
TU324694 other downstream 1988952 4338719 ~ 4343183 (+) False CI01000072_04338747_04342064

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00018161 True 2401 mRNA 0.42 3 NC_007126.7 25096032 ~ 25099679 (-)