RNA id: CI01000072_02290646_02296564.mRNA


Basic Information

Item Value
RNA id CI01000072_02290646_02296564.mRNA
length 1545
RNA type mRNA
GC content 0.53
exon number 4
gene id CI01000072_02290646_02296564
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 2290414 ~ 2296761 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATAAATACGACAGTGATTCACATTCATCTCTATCTCAAACACCATCCAGATGTTGTTATTTCGATGTAGGAGATGATAACATCTCACTCATATTCAGTCGGGAGATGGTTTAGCTGGGCTGGAGCAGGAGGGAGGGAATGGGGCCCCAGTCTACGGATCAGGAGTTCAGTGGGTTTGGGTGTTTGTAGAGCAGGCCGGACTCTGTGTGTGTGTGACTAATAGAGGCAGGCATGCACAGCTGTGAGCTGGAGCTGCGCCTGATGCAGTACGCAGACCACAGAGCTGTCAGCATGCCTCATCAGCGCGTGTGCACTCGTGCACACCAAGTGAATGCCTTCCCAGAAGTGGGAGGTGCTGTCATGCTTTGGGTAATCCACGTGTTTGAGCGAACTCTGAAGAGGAAGGAGAAAGACTACGAGCATGAGATGGAACGTTTGGCGCGGGAGAAGATCGCCTTGCAGCAGAGACTGGCTGAGCTGAAGAACGAGCTGAGCCAGCGATTCGATGTGATTGAGATCGACCGCGTTCTTCGACAGACTGTGCAACCAGATGATGACCAGGCCTCTACCTCCACTGCCTCAGAAGGCGAAGACAACATCGATGAAGATATTGAAGACGAGAGCTTATCCGCCATGGCCAACGCCTTACTCAAAGTGCCTGTTGCGCTTCTGCCAGAGTTAAAGAAATCCCATTCTGCGTTGCCCCTTATAACACAGCACATCTCCATCCCGCACAAACAGTCTAAAACTTTGTCCCCGATTCCCTCAGCTCAACTATCCCCTGTCGCCGCAGCTGCCCCGATCACAGCTCCCGCTTTGTCCTCAATGCCAGCACTGGCTCCTAATGGCCCACCATCCACTCCGGCCCCGCAGACCCTACCTCCGGCCCAGACCCATATAGTGACCACGGCCAGCCTGCAGCCTTCCGTCATTGCTCACGCGGGATCGGCGTCGCACGCCTCTGTCATCCAAACCATCAATCACGTCATCCAGCCAAGCTCCAAGCACGTGGCCCACATCGCCCCTTCCTCTTCAAACTCGGTGCAGCTGGCTCCTGGACCTCAATCCATTAGCCATATCACTGTCGCCCACCTTCCTGCAATCTACCCTCAGCCCGTTACGGTCACACAGCCGGCAGTTATGAGCCACATCGCGCACACGCTCTCTCACGGCCAAATGAACGGCACTTCGGCATCTGCCGCACAATCCGCCATGGTTGGCAAGCAGACGGCTGTGGGTGCTCAAGTGGTTACCCATCACCCTCAGCTGGTGGGCCAGACCGTCCTCAACCCGGTCACCATGGTGACCATGCCCTCCTTCCCAGTCAGCACGCTAAAGCTGGCCTGAAGCGCTGACAGTCGGACCCCTAGATAGAGTATAGACACTTACACCACATCCGCCCCGTTTGAGACTGCGGCACTGCATCTAAACGAACTATAAAACTACAGGACTCAGTACATTCCAAATGAAAAGAAAGTATATAAAGACTCAAAAAGTGACAGAAAGAAATTTATTGAATGTCTAATACTATATAATGATATATA

Function

GO: NA

KEGG:

id description
K09115 MNT, ROX; MAX-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322759 lncRNA upstream 47825 2237117 ~ 2242589 (+) True G284785
TU322763 lncRNA upstream 222054 2023415 ~ 2068360 (+) True G284789
TU322858 lncRNA upstream 323101 1967047 ~ 1967313 (+) True G284876
TU322719 lncRNA upstream 351096 1937487 ~ 1939318 (+) True G284745
TU322851 lncRNA upstream 365225 1924112 ~ 1925189 (+) True G284873
TU322761 lncRNA downstream 68116 2364877 ~ 2365224 (+) True G284787
TU322885 lncRNA downstream 73920 2370681 ~ 2371362 (+) True G284901
TU322892 lncRNA downstream 84293 2381054 ~ 2381430 (+) True G284907
TU322894 lncRNA downstream 85705 2382466 ~ 2382677 (+) True G284909
TU322916 lncRNA downstream 118539 2415300 ~ 2415510 (+) True G284929
CI01000072_02282323_02282873.mRNA mRNA upstream 7422 2282323 ~ 2282992 (+) True CI01000072_02282323_02282873
CI01000072_02209186_02258457.mRNA mRNA upstream 31957 2209186 ~ 2258457 (+) True CI01000072_02209186_02258457
CI01000072_02163279_02183332.mRNA mRNA upstream 106933 2163279 ~ 2183481 (+) True CI01000072_02163279_02183332
CI01000072_02140839_02148226.mRNA mRNA upstream 141765 2140839 ~ 2148649 (+) True CI01000072_02140839_02148226
CI01000072_02109877_02133927.mRNA mRNA upstream 156385 2109877 ~ 2134029 (+) True CI01000072_02109877_02133927
CI01000072_02326222_02344508.mRNA mRNA downstream 29461 2326222 ~ 2345441 (+) True CI01000072_02326222_02344508
CI01000072_02348164_02349155.mRNA mRNA downstream 50871 2347632 ~ 2349767 (+) True CI01000072_02348164_02349155
CI01000072_02351008_02356285.mRNA mRNA downstream 54247 2351008 ~ 2357080 (+) True CI01000072_02351008_02356285
CI01000072_02390649_02398813.mRNA mRNA downstream 92420 2389181 ~ 2399224 (+) True CI01000072_02390649_02398813
CI01000072_02422050_02429020.mRNA mRNA downstream 121690 2418451 ~ 2429431 (+) False CI01000072_02422050_02429020
TU322715 other upstream 305274 1981530 ~ 1985140 (+) True G284742
TU321805 other upstream 1939126 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU323494 other downstream 1673496 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 1872343 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 1872343 4169104 ~ 4175651 (+) True G286470
TU324705 other downstream 1928077 4232318 ~ 4232421 (+) False G286474
TU324694 other downstream 2041958 4338719 ~ 4343183 (+) False CI01000072_04338747_04342064

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00018165 False 4998 mRNA 0.43 5 NC_007126.7 25172671 ~ 25198107 (-)