CI01000046_00557959_00566058 (CHRNA9)


Basic Information

Item Value
gene id CI01000046_00557959_00566058
gene name CHRNA9
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 555539 ~ 566877 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_00557959_00566058.mRNA
AATGCCTTTATTTATTATTGCTTTGTGGAATAGTGAAATAAACACTAGTTTCATGGCTGAGCATGTGATGTTTGGATGATCTGTATTTTGCATTGACTGCAGGTTTTGACAGCACAAAAACATTCGTACAGATGTCTTTCTCTCTGAATATATGATCATGGAGACGGATCTTGGCATAATATATCACTTGTTTTACTATTTTTAGATATTATATACAGTATTCAGACATGGTCGTAATAATATATTTTTGGACGTTTGCCTATAGGTGTTTTTGAAGCAATTTACAGTGACATGCATATGGTAATCATTGAAAACCATTGTTTATATTAAAGTACCATAGTATTACACTGAGCTCCGGTCCTCTGGTTCCAGTCCAAACTGATCAGGATTCTCAGGTTCCGTCCGTTTTGTCGTGTTTCTGTTGGCTAGATGCGTATCTTTGTGCTGAACGGACGGGTTAACTGCATCACCTTCCCGCGCCACGGGATTAAGACGCTCTTTTAACATCTAAAACTAAACCAAAGGCGCACTACAGATGACCTAGATTGCATTTCGCTCCCGTGTTATTTCAGGACACGGTAATGATAAAGGTGTCATTTCCGTCTCCATCCCCACATCATCTCTGTTACCTGTCCGCGAGCCCACCTGTTGCGCGCGTGATTGACAGCTGAATAGCGGCGCATCTGGTTACCCGGAGCGCAACGCGACACCCGGAGCTCCAGTGTCCTAAACGCCTGACGGCAGATCCAGCGCGTAACGGGCCAGAACAGAGCAGCACTACCGCTGATCTGCTGCCGCGGATGATCTCTGCTCGGGGTGATGGAGAGGATCTGGGTGGAGATGCTGTTCTTTTCTGCGCTGTTGCTCGCTGAAGTTGCTCACTGTGCTCAGGGTCGATACGCACACAAACTCCTGAATGATCTGATGGAGAATTACTCCACTGCTCTGAGACCGGTGGACGACACAGACAAAACCCTCAACGTCACGCTGCAGGTCACGCTGTCTCAGATCAAAGACATGGACGAGAGGAACCAGGTGTTAATCGCGTATCTGTGGATCAGACAGACGTGGCATGACGCCTACCTGAAGTGGAATAAAGAGGAGTACGATGGTCTGGAGGTGATTCGCATTCCCAGCAGCCTCGTGTGGAGACCAGACCTGGTGCTGTATAACAAGGCGGATGATGATTTCTCTGGGCCGGTGGACACTAATGTGGTGTTGCGGTATAACGGTGAGATCACGTGGGACGCTCCGGCCATCACTAAGAGCTCCTGTGTGGTGGATGTTTCCTACTTTCCCTTTGACAGCCAGCAGTGCAACCTTACCTTCGGCTCATGGACCTACAACGGAAACCAGGTGGACATCAGCATGGGGATGGAGAGCGGGGACCTCTCGGACTTTGTGGAGAATGTGGAGTGGGAATGTCATGGAATGCCGGCCACTAAGAATGTGATCATGTACGGCTGCTGCTCGGATCCGTATCCCGACATCACCTACACGGTTCTACTGCAGAGGCGGAGCTCGTTCTACATCTTTAACCTGCTGCTGCCCTGTTTCCTCATCTCCTTCCTGGCACCTCTGGGCTTCTACCTGCCCGCCGACTCGGGCGAGAAGGTTTCGCTGGGCGTGACAGTTCTGCTGGCGCTCACCGTGTTTCAGATGATGGTGGCGGAGAGCATGCCTCCCTCCGAGAGCGTTCCTTTGATCGGTAAGTACTACGTAGCGACGATGACTATGATCACAGCATCCACTTCTCTGACCATCTTCATCATGAACATTCATTTCTGTGGAGCGGAGGCCAAACCGGTGCCGTACTGGGCCAAAGTTCTCATCATCGACTACATGTCCAAGATCTTCTTCGTCTATGAGGTCGGAGAGAGCTGTGCGTCACCGTTCGGACAGACGGAAGATTCCGAGCCCTTCCTTCAGAACCACAAACAGAACCTCAAGAAGAAACTCAAAGGAGCTCCGCCCCCTTGTTGCCCTGATGATGACAAATCGGCTGCCTTCCATCTGACCTTTGACCGCTGTGTTTACTGCAGTTGTCGTGGCAACGGTGGAATTCTCGGGTGCGACCCGAAGCTGGTCTGGAATGTCGAATATATCGCAAACTGCTTCCGCGAGCAGAAGGCGACGTGCCTGAAAGTGGCCGAATGGAAGAAGATCGCCAAGGTGATGGACCGATTCTTCATGTGGATATTTTTCATCATGGTCTTCCTCATGAGTATCCTCATTATCGGTAAAGCACCTTGAGACTCCTGACAATCGACCGCCATTTTCAATCTGTGTTACCAGTTCCACAACACATGTTTTGCTGACTTTGTTTATGCAAATATCTGCCAGTGGGGTCAGTAACATAACCTCGATTCAAAGGGAAAACAAGATTACTTTTCTGACCCCACTGGCAGATATTTGTTTTTATTTTAAGTCATTTTGTTTCTCCAGTAAATATATTTTGATTTAAGAATGTTTAGATATTTGTGCTGGAAAACAAGACAGAAACACTGAAACACTTATGTTTACTTTGCAGTGCAGAAAACTTCTGAGAATGTGATTTAAGTTAAGAAAGATGATAGTCTTACAATTATAATTGAGTTTTAACTTCTTCAAATGTGTGTGCGAGTGTGTGTGTGAGTCTGAGTGTGTGCGTGTGTGTGTGTGTGTGTGAGTGTGTGTGTGTGTGAGTGTGTGTGTGTGCACGAGTCTGAGTGTGTGCGAGTGTGTGTGTGTGTGCGAGTGTGTGCAAGTCTGAGTGTGTGCGAGTTTGTGTGAGAGTGTGTGTCCGAGTGTGTGTTTGTGTATGACAGTGTGTATGAGAGTGTGTGCGAGTGTGTGTGTGTGTGCGTGCGAGTGTGTGTGCGAGTGTGTGTGTGAGAGTGTGTGCGAGTGTGTGTGTTAGTGTGCGAGTCTGAGTGTGTGCGAGTGTTTGTGTGTGTGCGAGTGTTTGTGCGAGTGTTTGTGTGCGAGTGTGTGTGTGAGAGTGTGAGTGTGTGCGCGAGTCTGAGTGTGTGCGAGTGTGTGTGTGCAAATGTTGTGTGCGAGTGTTGGTGTGTGTGTGTGAGTCTGAGTGTGTGCGAGTGTTTGTGTGCAAGTGTGTGTGTGTACGAGTGTTGTGTGCGAGTGTTGGTGAGTGTGTGTGTGTGTGTGTGTGTGAGTCTGAGTGTGTGCGAGTGTTTGTGCACGAGTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGCGAGTCTGAGTGTGTGCGAGTGTTTGTGCGCGAGTGTGTGTGTGTGTGTGTGTGAGTCTGAGTGTGTGCGAGTGTTTGTGTGTGTGAGTGTGTGTGTGTGTGAGTCTGAGTGTGCAAGTGTTTGTGTGCGAGTCTGAGTGTGTGCGAGTGTTGGTGTGCGAGTCTGAGTGTGTGTGAGTGTGTGTGTGCGAGTATGTGTGTGTGTGTGTGCGAGTCTGAGTGTGTGCGCGAGTGTGTGTGTTTGTGAGTGTTGAGTGTTGGTGTGTGTGCGAGTCTGAGTGTGTGTGAGTGTTTGTGCGCTAATGTGTGTGTGTGTGAGTCTGAGTGCGTACGCGAGTGTGTGTGTTTGTGAGTGTTGGTGTGCGAGTGTTGGTGTGTGTGTGAGTGTGTGTGTGTGTGCAAGTGTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGCACGTGTGTGCACAAGTGTTGGTGTGTGTGTGTGTGTGTGAGAGTGTGTGTGTGTGCGAGTCTGAGTGTGTGCGCGAGTGTGTGTGTTTTTGAGTGTTGGTGTGCGAGTGTTGGTGTGTGTGCGAGTGTGTGTGTGTGTGTGCAAGTGTTGGTGTGTGAGTCTGAGTGTGTGCGAGTGTTTGTGCGCGAGTGTGTGTGTATTTGTGTACTTGTATCTTTGTGTTTTAGATCATCAGAGTGACACAGAGTAAAGTGAGGTCATTTTGTCCGTTCTTCACTCTCTGGGATCTTTTTAAAGGCCTGTTTGAGGGTCAGACTTGGTTTTAGGGATCAGGTGATAATTGGGTAAAGGGTAGAGTAAGGAGCTGGAGATTACACTGTGTCAATGAATGTCCTCACAATGTACAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTTAATCTGAGTATTAATAATGTAGACTATCTTGCCTCTCAATGAGCACATCAGTTATGTCAGTCTTTCTGAAAGAGATCTGCTGTTGTTCATTAGAAGGCTGTAACCATCTACATTACACACACACACACACACACACACACACACGTAGCTATGCAAATAAGCACATACATAGACTTATAATGGTTTTATATATTAGATAAACACATGAACAATTATACTGTGACGTTCAGTATGAGCTGGATTGATAACATTATACTGTACCTTTAATGCATTAATGCAGTGTAAATGCATGGATGTAAATTTCCAGAAGCCTCTGTGTCACCTGTGTTTGTGTACATAGAAATGTTTTACATAAATTAATGTTTTATGTTTTGACCTAGACATAATCTTGTCATGTTTATTTGTCAGTTTGGCCATAAGAGGTTTGTGTAATTCATGCACTGTTTTCTGTTCTTCTGTTGAAGAAAATGTAAATCAGATTCCTTTATATACATTGTTTTATTTGTCTCCGACTGCCCTTTTAGTGGACAGGACACGGAAAAACGGACTTAGTGCTGATATTAGAACAAAAACACAAATAAA

Function

symbol description
chrna9 Enables acetylcholine-gated cation-selective channel activity. Acts upstream of or within positive regulation of cytosolic calcium ion concentration. Is integral component of plasma membrane. Part of acetylcholine-gated channel complex.

GO: NA

KEGG:

id description
K04810 CHRNA9; nicotinic acetylcholine receptor alpha-9

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_00557959_00566058.mRNA True 4673 mRNA 0.47 6 555539 566877

Neighbor

gene id symbol gene type direction distance location
CI01000046_00527690_00528880 NA coding downstream 26659 527512 ~ 528880 (-)
CI01000046_00461851_00464237 NA coding downstream 91302 461715 ~ 464237 (-)
CI01000046_00446100_00446285 FGF2 coding downstream 109254 445571 ~ 446285 (-)
CI01000046_00428495_00432835 SPATA5 coding downstream 122704 427619 ~ 432835 (-)
CI01000046_00399845_00400761 NA coding downstream 154727 399189 ~ 400812 (-)
CI01000046_00567573_00573618 UBE2KB, UBE2K, UBE2KA, UBE2K.S coding upstream 36 566913 ~ 575050 (-)
CI01000046_00589815_00591549 NA coding upstream 22771 589648 ~ 591549 (-)
CI01000046_00619217_00636285 NA coding upstream 52092 618969 ~ 636446 (-)
CI01000046_00660745_00664133 NA coding upstream 92327 659204 ~ 664133 (-)
CI01000046_00665298_00665879 NA coding upstream 98421 665298 ~ 665879 (-)
G195107 NA non-coding downstream 95014 458527 ~ 460525 (-)
G195202 NA non-coding downstream 100330 454937 ~ 455209 (-)
G195120 NA non-coding downstream 148252 406967 ~ 407287 (-)
G195194 NA non-coding downstream 166995 388127 ~ 388544 (-)
G195189 NA non-coding downstream 178378 376921 ~ 377161 (-)
G195245 NA non-coding upstream 21248 588125 ~ 588385 (-)
G195249 NA non-coding upstream 31408 598285 ~ 599020 (-)
G195250 NA non-coding upstream 32263 599140 ~ 599950 (-)
G195124 NA non-coding upstream 103192 670069 ~ 670568 (-)
G195097 NA other downstream 129213 407423 ~ 426326 (-)
CI01000046_00063416_00065082 NA other downstream 489628 63153 ~ 65082 (-)
G195098 NA other upstream 103859 670736 ~ 676128 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other upstream 210856 774434 ~ 780293 (-)
G196463 NA other upstream 1601389 2168266 ~ 2168644 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other upstream 2299382 2866070 ~ 2867794 (-)
G198265 NA other upstream 3190746 3665243 ~ 3800101 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_007598 LO018568.1 coding NC_007125.7 CM002898.2 669982 ~ 677801 (-)