CI01000046_02873360_02887683 (SNX8A, SNX8)


Basic Information

Item Value
gene id CI01000046_02873360_02887683
gene name SNX8A, SNX8
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 2872981 ~ 2887683 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_02873360_02887683.mRNA
AGCCTGTAGAACCTGATGAAGCTCCACCCACCCGCTCTGTCACATACTGTACCATGTGTTTCCACATCACTACAACTTTAAGGAGAAGGACATTCCTGCTCTTTTCTGCAGGAAATCACATGGAGATAACCGAACATGTAAACAATGGTGATGGATTCTTAAGTAAAGTCTCGCTGTATAAAGGCTTGGCTCTCATTGCCCTTGCACAACAAGGAAAACCACCAAGTCCCAAACTGCTGGAGAATTTCATACAAGAGTTCCCAAAGCCTCAGCTAGGAGAGCCGAAGGAGCTTCAGAGTCTGAAGATGCAGTCAGTTCAGGAGAGTCCTCTGATCTTGTCCTTGACTCTGGCAGAGCTGTTAAAGAAGGACACCATCAAAGTTGAGCTCATTCCTGAGAAGAAGGGACTGTTTCTTAAACATGTGGAGTATCAGGTCACCAGTGAGCGTTTTACAGTATCAGTCTATCGGCGATACAGCGATTTTGATGTCTTCCATGAGCTCCTGCTTCAGAGATATGCTTACAGAGCCGTGCCGGCGCTTCCTCCCAAAAGGGCGCTGAAAGGAGTCCTCACCTCCATGTCAGAGCGAGAGTTCATTGAAGGGCGGAGACGAGCTCTGGGCAGGTTCCTAAATCTTGTGGCACGACACCCTGTCTTTTCCGAAGATGAGCTCGTGAAAATATTCCTGACCTTCAGTGGTTCGGATGTCCAACCTAAGCTTAGAGATGCTTGCAAAAAATTGGGGGATGAGTTCATGACCTGCAAATATGCAACACAGGCTAAGGATTACCTCCCAGCAGATATCCAAAGTCAGTTTTCATCCAGCAGGGAGCTCATCAGAAATATCCATAGCAGTTTTCAGAAGTTACGAGACAGGGCAGAGAGGATGGCCGAGCGCTCGAAGGAGAACGCCACAGATCTGCTGATGTTTGGGAAGGAGATCAGTTCTTTGGGATCAGATGAGTCACCTGTGCCTCTCCTGGCATCCTGCAAGAGTCCCTGGGCTGCTCTCAAGCACTCTGTCAAAGGGCTTTCTGTTGAGTTCTCACTTCTGTCTGAAAAAGCTGCCCAGCAGGGCAGAAGAGAGGAGGATGATGTGGTGGAAAAACTAAATCTGTTTCTGGACTTGCTGCAGTCGTACAGGGACTTGTGTGAACGGCACGAGAAAGGGGTCTTGCATGAACATCAGCGAGCGCTGCAGAAGTACAGTGTCATGAAGAGACAAATGATGAGTGCCACCGTGCAGCCTAAAGAACAGGTTTCTGTAGAGCAGCTGGAGTCCCGCATCGTCCAGCAAGAAAACGCCATTCAGGCCATGGAGCTGCGCAACTACTTCTCCCTGTTCTGCCTGCACCAGGAGAGCCAGCTCATATTCACATACCTGCCCATTACGTCTCATATCCTGGGGGCATTTGTAGACTCACAGGTGCAGGGACATAAAGAGATGGGTGAGGTGTGGCAAGATCTTCATTTCAAGCTCAAAAGTCTTTTTGGGGACGGTAACGGACGGTCTCCGCCTCTCAGCCCAAAATAGCCTTCCTTCTGTGCTTTCTGAATCACAAGAAGAAAATGAACTCAAGCCTGTTGTGAATAGCAGGATCTCTTCAGGAATTAGAGACCCTACAAAGAATTATGGGAAACTGCATCTGTCTAAATGTTCATGTGGCAGATCTTAAAATCTGAGGTAAAGAGGGCCCCTTGATTACTTACAGTTTGAACAAATGGACGCCTAAAATGAATGGCTATTGTTGTTGTTGAGAATAATTTTAGGAAGACACTGTATTAAGGTTTTTAATCGACATTTATGCAAAGATGATGTTGCTGTTTTGAAATGTAAGCTAATCTGAAAGAGAAGATATTTTACTTTTTACTAGAAATTTTACTACAAGATGCTATCTTAGGTGCAATATAAA

Function

symbol description
snx8a Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within protein transport and retrograde transport, endosome to Golgi. Predicted to be located in membrane. Is expressed in several structures, including EVL; periderm; tail bud; vasculature; and ventral mesoderm. Orthologous to human SNX8 (sorting nexin 8).
snx8 Enables identical protein binding activity and phosphatidylinositol binding activity. Involved in early endosome to Golgi transport and intracellular protein transport. Located in early endosome membrane. Colocalizes with retromer complex.

NR:

description
sortin nexin member

GO:

id name namespace
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17922 SNX8, MVP1; sorting nexin-8

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_02873360_02887683.mRNA True 1914 mRNA 0.46 12 2872981 2887683

Neighbor

gene id symbol gene type direction distance location
CI01000046_02866255_02867695 MRM2, FTSJ2 coding downstream 5286 2866070 ~ 2867794 (-)
CI01000046_02480126_02480593 PSMG3 coding downstream 391040 2479876 ~ 2481941 (-)
CI01000046_02458763_02477098 TMEM184A coding downstream 395883 2458472 ~ 2477098 (-)
CI01000046_02446041_02449287 NA coding downstream 423632 2445666 ~ 2449349 (-)
CI01000046_02402389_02433773 INTS1 coding downstream 439023 2402171 ~ 2433958 (-)
CI01000046_02972183_02978771 LFNG coding upstream 84500 2972183 ~ 2978771 (-)
CI01000046_03067420_03068783 CHST12A, CHST12 coding upstream 179684 3067367 ~ 3068783 (-)
CI01000046_03080433_03083966 EIF3B, EIF3BA coding upstream 192750 3080433 ~ 3084292 (-)
CI01000046_03095399_03129278 GNA12, GNA12A coding upstream 207270 3094953 ~ 3129652 (-)
CI01000046_03140684_03161621 CARD11 coding upstream 252699 3140382 ~ 3161621 (-)
G196692 NA non-coding downstream 97305 2775371 ~ 2775676 (-)
G196500 NA non-coding downstream 590447 2282268 ~ 2282534 (-)
G196479 NA non-coding downstream 640792 2231938 ~ 2232189 (-)
G196469 NA non-coding downstream 692233 2180453 ~ 2180748 (-)
G196464 NA non-coding downstream 703938 2168830 ~ 2169043 (-)
G197976 NA non-coding upstream 74307 2961990 ~ 2962246 (-)
G197978 NA non-coding upstream 79069 2966752 ~ 2966976 (-)
G198002 NA non-coding upstream 128777 3016460 ~ 3016829 (-)
G198012 NA non-coding upstream 160496 3048179 ~ 3048425 (-)
G198013 NA non-coding upstream 161418 3049101 ~ 3049519 (-)
G196463 NA other downstream 704337 2168266 ~ 2168644 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other downstream 2092688 774434 ~ 780293 (-)
G195098 NA other downstream 2196853 670736 ~ 676128 (-)
G195097 NA other downstream 2446655 407423 ~ 426326 (-)
G198265 NA other upstream 869940 3665243 ~ 3800101 (-)
G199054 NA other upstream 3209676 6097359 ~ 6097674 (-)
G199014 NA other upstream 3476495 6364178 ~ 6375406 (-)
G199130 NA other upstream 3690297 6577980 ~ 6594210 (-)
G199181 NA other upstream 3939002 6826685 ~ 6830453 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00018099 NA coding CM030135.1 CM030135.1 1756664 ~ 1769934 (-)