CI01000046_03443490_03508344 (SDK1, SDK1A)


Basic Information

Item Value
gene id CI01000046_03443490_03508344
gene name SDK1, SDK1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3443277 ~ 3508481 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_03443490_03508344.mRNA
CAATAAAAAGCATCAGTAGTGTTTTGATGGACATAACATTGTTTTAATACAATTTACTGGCTGTTGTTTGGCCTCTTTTAATAATTTACGTGTTCCTGTGGGGGTGTGTGGGTGGACTGCATTAAGCGTGAATGTGGGGCTACTGAACGAATGTGTCGTTTTCTTGTCCTGATTAAAAATGTGTGTGTTTGTGTGTGTGTGTGTTCCGCAGGTATGGCTCCGGCCTTCATCGCGGCGCCGGTCGACATCACTGTCACAGACGGAGCGGTGGCTACGTTCACCTGTCAGGTATCTGGGGCCCCTAAAGCAGCCATCATCTGGAAGAGAGATACTCAGATCCTTGCCAGCGGTTCAATGCAGATTCCACGTTTCACCCTGCTGGAGTCCGGCGGTCTGCAGGTTCAACCGGTGGTGCTGCAGGACACGGGCATGTACACCTGCTACGCCGTTAACTCAGAGGGAGCGATCAACGCCAGCGCCTCCCTCACCGTATGGAGTCGCACATCCATATCCAGCCCTCCCATGGACAGACGTGTCATTAAGGGGACCACAGCCATTTTGGAGTGTGGCGCCACCCACGACCCGCGCGTGGAAGTGAGGTATGTGTGGAAAAAGGATGAAGAGTTAGTGAGCCAGACCAGAGGGGGGCGTATCAGCCTGCAGGAGGGCTCCTTGCACATCAGTCAAACCTGGTCCGGGGACATCGGGGACTATGCCTGTGACGTCATCTCTCAGGCCGGCAACGACTCCAAGGCGGCCCGTCTGGAGGTCATAGAGCTGCCACACTCGCCTCGAAACCTGCAGGCCAGCCTGAACAGCAATGACAGCCGCAGCGTGGACCTGTCCTGGATGAGACCCTTTGATGGAAACAGCCCCCTACTGCATTATGTGGTTGAGCTCTCAGAGAACAATTCTCCCTGGAGAGTGTATTTGCCTGATGTGGACCCCATCGTGACACGGGCCATGGTGAAGGGACTCACTCCCGCCCGCTCATACCAGTTCAGGGTCTGCGCAGTCAATCAGGTGGGCAAGGGACAGTACAGCACCGAAACAAACAGATTGATGCTGAGAGAGGAACCGCCCAGCGCTCCGCCCAAAAACATCGTAGCCAGTGGCAGAACCAACCAGTCCATTATGGTGCAGTGGCAGCCGCCCCCAGAGCCTCAGCTCAATGGAGTCTTAAGAGGCTACGTCCTCAGGTACCGGCTTGCGGGGCTCCCTGGAGAGTACCAGCAGAAGAACATCACCAGCCCTGAGATCAACTACTGTCTGATCACAGAGCTCATCATCTGGACCCAGTATGAGATTCAGGTGGCTGCATATACCGGGGCAGGCCTGGGCGTCTTCAGTCAGCCTGTCACTGAGTACACGCTGCAGGGAGTTCCTACAGCGCCCCCTCAGGGTGTGGAGGCCAAAGCAGTGAACTCAACCACCATTGAATTTACTTGGAATCCACCACCTCAGCAGTTCATCAATGGCATTAATCAAGGTTACAAGCTGATGGCATGGCCCGAACGGTCTCCAGAGGATGTTATCGTTGTGACTATCACCCCTGATTATCACGGGACACGTCACCTCGGTTTCATCAGCGGTCTAAAAAAGTTCACCTGGTACCTGACGTCAGTGCTTTGCTTCACCACACCAGGGAACGGACCCCGCAGTGCCCCCAAACTGGTGCAAACTCATGAGGACATTCCAGGCCCTGTCGGTCGCTTGAGCTTTACAGAGATTTTGGACACATCTCTGAGAGTGAGCTGGGAGGAACCTGTCGATAAGAATGGCATCATTACTGGTTACCTGGTATCCTGGGAGGTGCAGGGGAAGAACCAATCACGGGTAGCGCGCACCTTGGCCAACACTACGCTGGACTACAAGGTCACCGGCCTGACATCTCTCACCACGTACACCCTGGAAGTGGCAGCTATGACCGAGGCGGGAGTTGGAACTGTAACGTCCTCCACCATTTCGTCAGGAGTGCCACCAGAACTTCCCGGGCCTCCATCAAATCTGGTTATTTCCAAGATCAGTTCACGATCTGCTACGCTGAAGTTCCGTGCAGGGGATGATGGGAAGACGACCATCTCCAAGTGGATTGTTGAGGGGCAGGTGGGCAGTATTGGAGATGAGGAAGAGTGGAAGGTGTTGTACGAGAAAGAGAACGACCCTGAAGCTCAGTTGCTGGAGGTGCCCAATCTCACACCGTTCACACACTACAGGTTCCGAATGCGGCAGGTGAATATCGTGGGCCCGAGTCCAGTGAGCGTGCCATCCCGTGTAATTCAAACCCTGCAGGCTCCTCCGGACATGGCACCCAGCAGCGTGACTGTACGCACGGCCAGTGAGACCAGCTTGTGGCTACGCTGGGTGCCACTGCCAGAGACCGAGTACAACGGAAACCCGGAGAGCGTGGGCTACAGGGTCAGAGTGTTGCGAGCGGACCTGCGGGGTGAGGCCAACATACGATTGGTGAACGACAGGCTGGAGAGGGAGATCACCCTGGAGGGCCTGGAGGAGTGGACCGAGTACCAGCTGCAGATCCAGGCCTTTAATTCCATAGGCCCTGGACCCTGGAGTGAGACCGTGAAGGGTCGTACACGGGAGTCAGTGCCATCGGGGGCTCCGGAAAATGTGACGGCAGAGGCCATGAGCTCCAGTCGCATCCTGGTAACCTGGGGCCCTGTTCCTGAGCACGAGCAGAACGGAAACATCCTCGGATACAAGGTTCTCTACAAAGAGAAAGACTCAGATTCTGAGGCACAGGTGAACGTGGTTAAAGGGAATCTGACACAGTCTGTCTTGCTGAGGAACCTGCGTAAATATGTCCAGTACGAAATCCAAGTTTTGGCTTTTACACGAATCGGAGATGGGCAACTCAGCAGCCCCGCAGTCCTGGAGAGGACCAAGGATGATGTTCCAGGACCACCCATGAGACTTGTGTTTCCGGAGGTGCGTCTGACAGAGGTGAGGGTGGTCTGGCAGCCCCCTGTGGACCCCAACGGCATTATAATGGAAGCGTCAGCAAACCTGACCATTAAAGTCCGTGGCTGGGAATGGGAGTTTGCTTTGGATTTTGCAGCAGATCGAGTAGTTGCTCTTAATCTGACTCCAGCCGCCTTGCTCAAGCACAAAAAACGAAGGCAGATCAAGAGATGCTGGTTATGTAGATTGAAGTCACAGGGAGAGCTCTTTGAAAGAAGAAGAACGAGATTTCCCGGCATGCCTCTAATTTGCTGCATCTCGAAGAAAGGAAATGCTTTGAATGCAGGATACCAGGTAGCTTACCGTCTGGATTCTGGGGATCCCAACCAGTTCATCACAGTAGAGGTGGGTCCTGATACCCGTCAGTTCACCGCCTCCAACCTGACCCCAGAGTCGGCCTACATCTTTCGCATCTCCGCCAAGACGGAGCAGGGCTGGGGAGCACCTGCACAGGCTGTGGTCATAACTACTGAGATTAGAGAGCGACCGCAGCCTCCACGGCAGCTGCAAGTGCCACAGGACCACGTGCAGTCCCGCAAACTGCAGCTCAACTGGGTGCCTGGAGGGGACGGCTCGTCACCCGTCCGTTACTTTACCTTACAGACGCGGGAGCTACCCAACGGCAATTGGCTCACCCATTCCTCCGCTATAAGCCACAATTATACCTCCTGGGAGGTAGACAGCTGGAGGCTTTTAGGAGTGGGGCATCATGGGAAAAATATTCCCTTTAACCAAGTAATACGAATAGCGGAAAGCCCCCTCGTTTGGAAAGCACCGTGCAACTCATCTCAATCGACAGAGATCGGTTATGAGACCTAAACGACATGTTTAGTTTGTTAATGAGCCCAGTTGGCTTGTGCAGTGTGTTTTGGGTAAATGGGAAATGAACAAATTAGAAATGTAAGCAAAGTTTTTCTACATATTCCCTTTACTGTCAATTCCAGATGATTTTCAAC

Function

symbol description
sdk1a Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules; retina layer formation; and synapse assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in synapse. Is expressed in ciliary marginal zone; retinal ganglion cell layer; retinal inner nuclear layer; and retinal outer nuclear layer. Orthologous to human SDK1 (sidekick cell adhesion molecule 1).
sdk1 Predicted to enable identical protein binding activity. Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules; retina layer formation; and synapse assembly. Predicted to act upstream of or within behavioral response to cocaine and regulation of dendritic spine development. Predicted to be located in plasma membrane. Predicted to be active in synapse.

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K16353 SDK; protein sidekick

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_03443490_03508344.mRNA True 3935 mRNA 0.54 24 3443277 3508481

Neighbor

gene id symbol gene type direction distance location
CI01000046_03347042_03438271 SDK1, SDK1A coding upstream 5006 3347042 ~ 3438271 (+)
CI01000046_03205894_03253907 NA coding upstream 188947 3205592 ~ 3254330 (+)
CI01000046_03138487_03139142 NA coding upstream 303586 3138487 ~ 3140879 (+)
CI01000046_03046400_03047689 NA coding upstream 394845 3045779 ~ 3048432 (+)
CI01000046_03041320_03042564 GRIFIN coding upstream 400527 3041320 ~ 3042750 (+)
CI01000046_03511698_03542614 SDK1, SDK1A coding downstream 2924 3511405 ~ 3542844 (+)
CI01000046_03544999_03551574 CYP3C4 coding downstream 36518 3544999 ~ 3551897 (+)
CI01000046_03556534_03559710 CYP3C1, CYP3C2, CYP3C3, CYP3C4 coding downstream 47725 3556206 ~ 3559837 (+)
CI01000046_03572743_03591418 FOXK1 coding downstream 62262 3570743 ~ 3591453 (+)
CI01000046_03596032_03605678 AP5Z1 coding downstream 86987 3595468 ~ 3605846 (+)
G196784 NA non-coding upstream 359157 3082933 ~ 3084120 (+)
G196809 NA non-coding upstream 399795 3043191 ~ 3043482 (+)
G196780 NA non-coding upstream 419884 3023159 ~ 3023393 (+)
G196975 NA non-coding downstream 54016 3562497 ~ 3563548 (+)
G196885 NA non-coding downstream 114231 3622712 ~ 3642563 (+)
G196857 NA non-coding downstream 130428 3638909 ~ 3641270 (+)
G196846 NA non-coding downstream 135702 3644183 ~ 3644698 (+)
G196994 NA non-coding downstream 263361 3771842 ~ 3772078 (+)
G196936 NA other upstream 249006 3186995 ~ 3194271 (+)
CI01000046_02451052_02454565 MAFK other upstream 985997 2442395 ~ 2457280 (+)
CI01000046_01865451_01881353 NA other upstream 1484129 1865451 ~ 1881369 (+)
CI01000046_01540075_01668012 HS3ST4 other upstream 1879940 1539494 ~ 1668012 (+)
G195003 NA other upstream 2281587 1161157 ~ 1161690 (+)
CI01000046_03943890_03945302 ATP5J2 other downstream 435347 3943794 ~ 3945500 (+)
G197055 NA other downstream 640942 4149423 ~ 4149780 (+)
G197121 NA other downstream 862530 4371011 ~ 4371430 (+)
G196869 NA other downstream 907049 4415530 ~ 4421687 (+)
G197352 NA other downstream 1765901 5259318 ~ 5276453 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026679 sdk1a coding NC_007114.7 CM002887.2 40978997 ~ 41292569 (-)
bowfin (Amia calva) AMCG00018039 NA coding CM030135.1 CM030135.1 45315 ~ 128374 (-)