CI01000046_04013708_04017841 (SYNGR3, SYNGR3A)


Basic Information

Item Value
gene id CI01000046_04013708_04017841
gene name SYNGR3, SYNGR3A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 4011908 ~ 4017841 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_04013708_04017841.mRNA
ATGGACGGAGTGGGTTCATTTGGCGCTGGGAGAGCCGGGGCTGCGTTCGACCCTTTCGCCTTTATTCAGCAGCCGCAGACCATCCTTAGAATATTATCATGGATCTTCTCAATAGTGGTGTTTGGATCCATAATAAATGAAGGCTATGTCAACCACGGCAGCGAGAGGCTCTATTGCGTTTTCAACAAGAACAACAATGCCTGCAACTATGGGACCACCATTGGGCTCATAGCATTTCTAGCCTGCATTTTCTTCATTATCCTTGACATGAAGTTCCAACAAATCAGCAGTATTAAAGACAGAAAGAAGGCAGTGATGCTGGACATTGGATTTTCAGGTTTCTGGGCATTTTTGTGGTTTGTTTGTTTCTGCTTCTTGGCCAACCAATGGCAACGCACCACCCCAGATGAGCTGCCCTTAAATCAGGGAGCGGATGCTGCCAGAGCAGCCATAACCTTCTCCTTCTTCTCCATCTTCACCTGGGCTGGTTCGACTGTAAGAGCGGTGCAGAAGTACCTGCTAGGGACCGACATGACCCTGTTCACCACAGAGCACCTCGATGGCAATCCTCCCGTCCAGCCCTACCCCACCGTCACAAGCACCGAGCCCAACGACACATACCAGAGCCCACCCTTCACTGAGAACCTGGACTCCACCGCCCCAACCTACCAGGTGCCAATTTACTGAAACGCTGCCGAGTCCACGTGCGACGTCATTGGTCTGTCAGAATCAGTGTGAATGACTGGCACTGCTCTTCAAACTGAAGTGGTGTGACAATGTTCATAGGTAGTACCGTTCTGTGAACTTCTGTACAAGAATATGTTGATTGTGATTTCACTTTCGTTTGGAATATTACGTGTTAATTTATCAGCTGGGATGAAACTGGTTGAGGGGTATCAGTGTTGTATAAAAATGAAAAAGGTTACATTGCATGTATTATATTTAGAGAGCTATTAAGTGCCATGCATCCTAAACAATAACTTATATATTCAGTTTCCATAATGCTGTTGGGTACTGTATATAAAGTGCAATATCTGAAACATGGAATCACCAAACGTTTGACACATTTAAGTGTTCTCCAAGCTTATGAGAAAGGTGGTCTTCCTAAAAGAGGGTGGAGATTCGCTGTAGATAAGGGTGTCTTCTGTATCAAAGGTGTGTAAAAATGGTGTTGATTCAATGTTTGATTTAGTGAAGCTACTAAACCTGTAAAGACATAAAGAAAGATTTTATTTTGTCTGGATTTCGAACAAAAAAAAATATTAGTTGGAATTTTAAAAGCGAGGAATACAAATATAGTTATGTAAAAAGTTTAATTGGCATTTAAAATAATATTTTTAGGAATAATTTCACAAACCCGGACAAATGGTAAGTAAATTTGAATACACAACCGTTCAAAAGTTTACGGTCAGTAAGTTTTTTCAAAGAAATGAATACTTTTATTTAGTGAGGACACATTAGATTGATCAAAAATGACATAATGTTACCAAAAATCTCTATTTCAAATAAATGCTGCTCTTTTGAACTTTCTATTCATCAAAGAATTAAAAAAAAAAAAAAAACATGCATCACGGTTTTTAAGTATTAAGCAGCACAACTGTTTTCAACATTGATAATAATCAGAACTGTTTCTTGAGCATTAAATCATCATATCAGAATGATTTCTGAAGGATCATTTGACACTGAAGACTGGAGTAATGATGCTGAAAATTCAGAATAAAATTTACATTTTAAAATCTATTAAAATAGAAAACAGTTCTTTTAAATTGTAATAATATTTTACAATATTACTGTTTTTTATTGTATTTTTGATCAAATAAATGCAGCTTTGATGAGCATAAGAGACTCATCAAATCTTTACAGACCTCAAACGTTTGAACTGCAGTGTATATGCCAGTGTATGTGTTTGGGACACCCTTCAGATATTCATCAGTTGGCTGTTGTTAAAAAAAAAACAAACAAAAAAAAAGCGGTTTGGTGGCCATCATCAGTGCTTTGTCTGGTATGTGGTAGATTTTGGTAATGTTTCTGTGTTCAGAGATAGGGCAACATACAAAAATGATATTGATTGTACTTCAAAACATGTAAATGAAGTATGTTTGTGAAAGTGGTCAGGGTCTTGTGTTTCCTGTACTTAACTCTGCACTCCTTAAAATGCCTCATGGACCAATATTTAGGAGTAATTTACTGAGGTATGTTTTGCTGGATCAAAATTTGCACCTCTAAACAAGTACTATAGGCGATGAAGAGATGTATAATTAAAAGCCTTATTTAGTTTTTGTATTTGTACTCCTTTGAAGGATAAAGTGCAAAATTTGCATCAGTAAAAATGCCTTGACCTTGTCCATGACTCTTTTTAAACACATATTACATACTGTATTTGCAGGCAATATATCCCATCTTGTGATTGAAAGATGTACACAAAAGATTTGCTGTTGTAAGTCGGAATGTCTTCGGACTGCAGTTGTCAGACATTATGAAAATAAA

Function

symbol description
syngr3a Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuromuscular junction and synaptic vesicle membrane. Orthologous to human SYNGR3 (synaptogyrin 3).
syngr3 Predicted to enable SH2 domain binding activity and protein N-terminus binding activity. Involved in substantia nigra development. Predicted to be located in synaptic vesicle. Predicted to be active in neuromuscular junction and synaptic vesicle membrane.

GO:

id name namespace
GO:0030672 synaptic vesicle membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_04013708_04017841.mRNA True 2487 mRNA 0.37 4 4011908 4017841

Neighbor

gene id symbol gene type direction distance location
CI01000046_03967726_03970443 NA coding downstream 41195 3967457 ~ 3970713 (-)
CI01000046_03951775_03952660 BUD31, BUD31.L, BRAFLDRAFT_113775 coding downstream 58865 3951181 ~ 3953043 (-)
CI01000046_03946243_03948935 CPSF4 coding downstream 62364 3946230 ~ 3949544 (-)
CI01000046_03920813_03930435 SLC29A4 coding downstream 81274 3920235 ~ 3930634 (-)
CI01000046_03825822_03873637 TNRC18 coding downstream 136949 3825165 ~ 3874959 (-)
CI01000046_04021483_04023514 GFER coding upstream 2617 4020458 ~ 4023514 (-)
CI01000046_04125918_04128585 CCDC97 coding upstream 108046 4125887 ~ 4128585 (-)
CI01000046_04136250_04185791 CACNA1H, CACNA1HA coding upstream 118014 4135855 ~ 4185848 (-)
CI01000046_04279865_04297801 EPN2 coding upstream 262024 4279865 ~ 4297801 (-)
CI01000046_04329752_04335164 PRPSAP2 coding upstream 311043 4328884 ~ 4335164 (-)
G198426 NA non-coding downstream 583 4010740 ~ 4011325 (-)
G198417 NA non-coding downstream 14501 3982658 ~ 3997407 (-)
G198429 NA non-coding downstream 17210 3992433 ~ 3994698 (-)
G198423 NA non-coding downstream 20784 3990104 ~ 3991124 (-)
G198438 NA non-coding downstream 95979 3915693 ~ 3915929 (-)
G198459 NA non-coding upstream 9813 4027654 ~ 4027938 (-)
G198457 NA non-coding upstream 12940 4030781 ~ 4031323 (-)
G198460 NA non-coding upstream 13954 4031795 ~ 4049740 (-)
G198469 NA non-coding upstream 32059 4049900 ~ 4057116 (-)
G198476 NA non-coding upstream 39623 4057464 ~ 4057814 (-)
G198265 NA other downstream 211807 3665243 ~ 3800101 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other downstream 1144114 2866070 ~ 2867794 (-)
G196463 NA other downstream 1843264 2168266 ~ 2168644 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other downstream 3231615 774434 ~ 780293 (-)
G195098 NA other downstream 3335780 670736 ~ 676128 (-)
G199054 NA other upstream 2079518 6097359 ~ 6097674 (-)
G199014 NA other upstream 2346337 6364178 ~ 6375406 (-)
G199130 NA other upstream 2560139 6577980 ~ 6594210 (-)
G199181 NA other upstream 2808844 6826685 ~ 6830453 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025612 syngr3a coding NC_007114.7 CM002887.2 40170216 ~ 40180201 (+)
bowfin (Amia calva) AMCG00018505 NA coding CM030135.1 CM030135.1 12914014 ~ 12923467 (-)