CI01000046_04021483_04023514 (GFER)


Basic Information

Item Value
gene id CI01000046_04021483_04023514
gene name GFER
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 4020458 ~ 4023514 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_04021483_04023514.mRNA
ATGGCAGCCTCTGCCGGGTCGCGATCTTCCACGAGTAACAACACTGGTATGGAGGGTTTCCCTTTCCCCGTGGTTAACAGACCAACAGAGGACAGTACGAGTAAAGATCAGACCACTACCGGAGAACCGAAAAAGAAACCGTGCCGAGCGTGTACGGATTTTAAATCATGGATGAAGTTGCAGAAACAGACGTCCTCAGTCTCAGTGCAGGAGAGCAGGGCGGTGGAGGAAACTAAGCCTGTCGAATGCCCTCTGGACAGAGAGGAACTGGGCAGGAGCTCATGGTCTTTTCTTCACACTATGGCTGCATATTATCCAGACACACCGACCACAGAACAACAGGGGGAGATGACACAGTTCATCAACCTCTTCTCAAAGGTTTTCCCATGTGATGAATGTGCAGAGGACCTGAGATCAAGATTGAAATCAAATCAACCAGACGCTAGCAGCCGGCACAACCTCTCACAGTGGCTGTGTCGCCTCCATAATGACATCAACATCCGGTTAGGCAAGCCGGAGTTTGACTGCAGCAGGGTGGATGAGCGATGGCGAGATGGCTGGAAAGATGGTTCTTGTGACTGAAAATCTCCAACACAGTCATGAACTAAATATAGTCACATACTGATTCTGTGGACCTGTCATTTTTGTTTCAACAAATACAGGTCGCAGGGCCATTCAGGAGTCATGCATATACATATACATGTTGACTTTGCACTTAAAGGGATAGTTCACCCAAAAATGAAAATTCTGTCAATAATTACTCACCCTCATGTCGTTCTACACCCTAAAGACCTTCGTTCATCTTCAGAACACAAATTAAGATATTTTTTTGCCAGCAAGATCATTTACACATTCAAGCACCCAGAAAGCTACTAAAGACATATTTAAAACAGTTCATGTGACTTAAACCCTAATATTTAAGGTTGAAGCTTTACGAATCTTTTGTTTCGAATCAGTGGTTCAGAGCGCCAAAATCACATGAATTCAGTAAACGAGGCTTTGTCACATAAGTGTTTTGAAACTTAAATAGTTCACGTGACTTTGGCAGTTTGATACGTGCTCCGAACCACTGATTCCAAACAAAAGATTTGTGAAGCTTTGAAGCTTCATGAAGCAGTGTTTTAAAACCGCCCTTCACTAGATATTGTTTAATATAGTTGCTATTTTGTTTTTATGGTGCACAAAAAGTATTCTCGTCACTTTATAATATTAAGGTTGAACTGTTTTAAATATGTTTTTAGTACCTTTCTAGGCATTGAAAAAGGAAATTAACTTGCTGGCAATAGAGGCCTCACTGAGCCATTGGATTTCATCAAAAATATCTTAATTTGTGTTCTGAAGATGAACGAAGGTCTTACGGGTGTAGAACGACATGAGGGTGATTAATCATGTTATTTTCATTTTTGTGTGGACTAACCCTTTAAACATTGTTCTAACTGATATAATTTTTTATTAATATACAAATGTCTAAATTGTGCTTTTAATCAGTAGTTTGTCTGTCTACAAGACTATGGTGTTACAGCCCATACTTTTTTTGAATGAGCTCTTGATGGATGTAAATAGCCCAGAGGTAACTGGATGAACTCTGTTCCACAGATAGAAATAAA

Function

symbol description
gfer Enables flavin-linked sulfhydryl oxidase activity and identical protein binding activity. Acts upstream of or within heart development and liver development. Located in mitochondrion. Is expressed in several structures, including fin; gill; head; liver and biliary system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in kidney failure and renal fibrosis. Orthologous to human GFER (growth factor, augmenter of liver regeneration).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K17783 ERV1, GFER, ALR; mitochondrial FAD-linked sulfhydryl oxidase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_04021483_04023514.mRNA True 1607 mRNA 0.41 3 4020458 4023514

Neighbor

gene id symbol gene type direction distance location
CI01000046_04013708_04017841 SYNGR3, SYNGR3A coding downstream 2617 4011908 ~ 4017841 (-)
CI01000046_03967726_03970443 NA coding downstream 49745 3967457 ~ 3970713 (-)
CI01000046_03951775_03952660 BUD31, BUD31.L, BRAFLDRAFT_113775 coding downstream 67415 3951181 ~ 3953043 (-)
CI01000046_03946243_03948935 CPSF4 coding downstream 70914 3946230 ~ 3949544 (-)
CI01000046_03920813_03930435 SLC29A4 coding downstream 89824 3920235 ~ 3930634 (-)
CI01000046_04125918_04128585 CCDC97 coding upstream 102373 4125887 ~ 4128585 (-)
CI01000046_04136250_04185791 CACNA1H, CACNA1HA coding upstream 112341 4135855 ~ 4185848 (-)
CI01000046_04279865_04297801 EPN2 coding upstream 256351 4279865 ~ 4297801 (-)
CI01000046_04329752_04335164 PRPSAP2 coding upstream 305370 4328884 ~ 4335164 (-)
CI01000046_04336982_04343632 NA coding upstream 313191 4336705 ~ 4344054 (-)
G198426 NA non-coding downstream 9133 4010740 ~ 4011325 (-)
G198417 NA non-coding downstream 23051 3982658 ~ 3997407 (-)
G198429 NA non-coding downstream 25760 3992433 ~ 3994698 (-)
G198423 NA non-coding downstream 29334 3990104 ~ 3991124 (-)
G198438 NA non-coding downstream 104529 3915693 ~ 3915929 (-)
G198459 NA non-coding upstream 4140 4027654 ~ 4027938 (-)
G198457 NA non-coding upstream 7267 4030781 ~ 4031323 (-)
G198460 NA non-coding upstream 8281 4031795 ~ 4049740 (-)
G198469 NA non-coding upstream 26386 4049900 ~ 4057116 (-)
G198476 NA non-coding upstream 33950 4057464 ~ 4057814 (-)
G198265 NA other downstream 220357 3665243 ~ 3800101 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other downstream 1152664 2866070 ~ 2867794 (-)
G196463 NA other downstream 1851814 2168266 ~ 2168644 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other downstream 3240165 774434 ~ 780293 (-)
G195098 NA other downstream 3344330 670736 ~ 676128 (-)
G199054 NA other upstream 2073845 6097359 ~ 6097674 (-)
G199014 NA other upstream 2340664 6364178 ~ 6375406 (-)
G199130 NA other upstream 2554466 6577980 ~ 6594210 (-)
G199181 NA other upstream 2803171 6826685 ~ 6830453 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location