CI01000046_05274523_05275700 (RPS11, RPS11.L, RS11)


Basic Information

Item Value
gene id CI01000046_05274523_05275700
gene name RPS11, RPS11.L, RS11
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 5274468 ~ 5275700 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_05274523_05275700.mRNA
AACGAGAGGTCTTACCAGAAACAGCCCACCATCTTCCAGAACAAGAAGCGGGTTCTGGCTGTTGAAGGAAGTGGCAAAGAAAAGCTCCCACGTTACCACAGAAACGTTGGCTTGGGCTTCAAAACCCCCAGAGAGGCTATTGAAGGCACTTATATCGATAAGAAATGCCCTTTCACTGGAAACGTGTCCATCAGAGGCCGGATTCTGTCCGGTGTGGTGACCAAGATGAAGATGCAGAGGACCATTGTCATCAGGCGGGACTACTTGCATTACATTCGCAAGTACAACCGTTTTGAGAAGAGACACAAGAACATGTCTGTCCACCTCTCCCCATGCTTCAGGGACGTGACTCCTGGTGACATCGTAACAGTTGGAGAATGCCGACCTCTAAGCAAGACCGTGAGGTTCAACGTCCTGAAGGTCACCAAGGCAGCTGGAGCCAAGAAGCAGTTCCAGAAGTTCTAGAACTGTTGTTTGAACAACATGGCTCCTCTGTATTGTTTGTGGAAAAGACAATAAA

Function

symbol description
rps11 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS11 (ribosomal protein S11).

GO:

id name namespace
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process

KEGG:

id description
K02949 RP-S11e, RPS11; small subunit ribosomal protein S11e

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_05274523_05275700.mRNA True 520 mRNA 0.49 4 5274468 5275700

Neighbor

gene id symbol gene type direction distance location
CI01000046_05268350_05273119 NA coding downstream 1349 5267577 ~ 5273119 (-)
CI01000046_05249489_05250376 NA coding downstream 23868 5249327 ~ 5250600 (-)
CI01000046_05019723_05021281 ASIC2 coding downstream 253065 5019661 ~ 5021403 (-)
CI01000046_04892096_04931140 ASIC2 coding downstream 343328 4892096 ~ 4931140 (-)
CI01000046_04777328_04800857 NA coding downstream 473611 4777328 ~ 4800857 (-)
CI01000046_05284403_05296928 NA coding upstream 8291 5283991 ~ 5296928 (-)
CI01000046_05323801_05333193 NA coding upstream 47798 5323498 ~ 5333335 (-)
CI01000046_05344388_05350795 NA coding upstream 68202 5343902 ~ 5352165 (-)
CI01000046_05383841_05389838 WNT9B coding upstream 107780 5383480 ~ 5390336 (-)
CI01000046_05539022_05539815 NA coding upstream 263301 5539001 ~ 5539815 (-)
G198772 NA non-coding downstream 137761 5136479 ~ 5136707 (-)
G198769 NA non-coding downstream 165474 5108582 ~ 5108994 (-)
G198768 NA non-coding downstream 168521 5105683 ~ 5105947 (-)
G198760 NA non-coding downstream 391073 4883080 ~ 4883395 (-)
G198759 NA non-coding downstream 391483 4882771 ~ 4882985 (-)
G198701 NA non-coding upstream 125647 5401347 ~ 5431724 (-)
G198808 NA non-coding upstream 156115 5431815 ~ 5485778 (-)
G198819 NA non-coding upstream 184750 5460450 ~ 5467719 (-)
G198851 NA non-coding upstream 237889 5513589 ~ 5515837 (-)
G198912 NA non-coding upstream 494304 5770004 ~ 5770284 (-)
G198265 NA other downstream 1474367 3665243 ~ 3800101 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other downstream 2406674 2866070 ~ 2867794 (-)
G196463 NA other downstream 3105824 2168266 ~ 2168644 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other downstream 4494175 774434 ~ 780293 (-)
G195098 NA other downstream 4598340 670736 ~ 676128 (-)
G199054 NA other upstream 821659 6097359 ~ 6097674 (-)
G199014 NA other upstream 1088478 6364178 ~ 6375406 (-)
G199130 NA other upstream 1302280 6577980 ~ 6594210 (-)
G199181 NA other upstream 1550985 6826685 ~ 6830453 (-)

Expression


Co-expression Network