CI01000046_05746299_05753388 (PSMD11A, PSMD11B, PSMD11)


Basic Information

Item Value
gene id CI01000046_05746299_05753388
gene name PSMD11A, PSMD11B, PSMD11
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 5746299 ~ 5753388 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_05746299_05753388.mRNA
ATGGCGGCTGCGGCGGTAGAGTTTCAGAGAGCTCAGTCGTTGCTCAGTACGGATCGGAATGCGTCCATTGACATTTTACATGCTATCGTCAAACGAGACATCCAAGACAATGACGAAGAGGCTGTGCGTGTCAAAGAACAGAGTATTTTGGAGCTGGGCGGACTGCTGGCCAAGACTGGACAAGCTGCTGAATTGGGAGGTCTGCTGAAGTATGTCAGACCGTTCCTGAACTCCATCAGCAAAGCAAAGGCGGCACGGTTGGTGCGCTCTTTGCTCGATATGTTCTTGGACATGGAGGCAGCTACTGGTCAGGAGGTTGAATTATGTTTGGAGTGCATTGAATGGGCCAAATCAGAGAAGAGGACCTTTCTACGACAGGCCCTGGAGGCCCGTCTGGTCTCTTTGTATTTTGACACCAAACGTTATCAAGAGGCTCTGCATCTTGGCTCTCAGCTCCTGCAAGAGCTGAAGAAGATGGATGATAAAGCTCTGCTGGTGGAGCTCCAGCTGCTGGAGAGCAAGACGTATCATGCATTAAGCAACTTGCCCAAGGCCAGAGCAGCTCTGACCTCTGCCAGGACCACAGCAAACGCCATCTACTGCCCCCCAAAGCTGCAGGCTGCTCTAGATATGCAGTCAGGCATTATTCATGCTGCTGAGGAGAAGGACTGGAAAACGGCGTATTCATACTTTTATGAGGCTTTTGAAGGCTATGATTCTATTGACAGTCCCCGGGCCATCACTGCACTTAAGTACATGCTCCTTTGCAAGATCATGCTGAACTCGCCAGAGGATGTGCAGGGCCTGATCAGTGGAAAACTTGCCCTCAGATATGCTGGCAGACAGACAGATGCACTTAAATGTGTGGCCCAAGCAAGCAAGAACAGATCACTTGCAGACTTTGAGAAGGCTTTAAAAGAATACAAAGCTGAGCTGCAGGATGACCCCATTATCAGCACCCACCTGACCAAACTCTATGACAATCTGCTGGAACAAAATCTCATAAGGGTCATCGAGCCTTTCTCCAGAGTGCAG

Function

symbol description
psmd11a Predicted to enable structural molecule activity. Predicted to be involved in proteasome assembly; stem cell differentiation; and ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol and nucleus. Predicted to be part of proteasome regulatory particle, lid subcomplex. Orthologous to human PSMD11 (proteasome 26S subunit, non-ATPase 11).
psmd11b Predicted to enable structural molecule activity. Predicted to be involved in proteasome assembly; stem cell differentiation; and ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol and nucleus. Predicted to be part of proteasome regulatory particle, lid subcomplex. Orthologous to human PSMD11 (proteasome 26S subunit, non-ATPase 11).
psmd11 Predicted to enable structural molecule activity. Involved in proteasome assembly; stem cell differentiation; and ubiquitin-dependent protein catabolic process. Located in membrane and nucleus. Part of proteasome accessory complex.

GO:

id name namespace
GO:0022624 proteasome accessory complex cellular_component

KEGG:

id description
K03036 PSMD11, RPN6; 26S proteasome regulatory subunit N6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_05746299_05753388.mRNA True 1035 mRNA 0.50 9 5746299 5753388

Neighbor

gene id symbol gene type direction distance location
CI01000046_05718149_05727984 NSFA, NSF coding downstream 18315 5718129 ~ 5727984 (-)
CI01000046_05655039_05668170 TR-ALPHA, THRAA, THRAB, THRA coding downstream 77809 5655039 ~ 5668490 (-)
CI01000046_05577451_05586769 FAM134C coding downstream 158200 5576568 ~ 5588099 (-)
CI01000046_05569660_05573084 PSMC3IP coding downstream 172840 5569640 ~ 5573459 (-)
CI01000046_05545427_05560924 FMNL1A coding downstream 185097 5545375 ~ 5561202 (-)
CI01000046_05874697_05877228 NA coding upstream 121171 5874559 ~ 5879577 (-)
CI01000046_06054062_06061413 NA coding upstream 300606 6053863 ~ 6061555 (-)
CI01000046_06095369_06102443 NA coding upstream 341635 6095023 ~ 6102710 (-)
CI01000046_06165650_06167393 NA coding upstream 412250 6165638 ~ 6167708 (-)
CI01000046_06171463_06172702 DCTN5.S, DCTN5 coding upstream 417618 6171006 ~ 6174632 (-)
G198851 NA non-coding downstream 230462 5513589 ~ 5515837 (-)
G198808 NA non-coding downstream 260521 5431815 ~ 5485778 (-)
G198819 NA non-coding downstream 278580 5460450 ~ 5467719 (-)
G198701 NA non-coding downstream 314575 5401347 ~ 5431724 (-)
G198772 NA non-coding downstream 609592 5136479 ~ 5136707 (-)
G198912 NA non-coding upstream 16616 5770004 ~ 5770284 (-)
G198718 NA non-coding upstream 53086 5806474 ~ 5807357 (-)
G198927 NA non-coding upstream 90322 5843710 ~ 5844346 (-)
G198935 NA non-coding upstream 111301 5864689 ~ 5867905 (-)
G198939 NA non-coding upstream 231552 5984940 ~ 5987398 (-)
G198265 NA other downstream 1946198 3665243 ~ 3800101 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other downstream 2878505 2866070 ~ 2867794 (-)
G196463 NA other downstream 3577655 2168266 ~ 2168644 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other downstream 4966006 774434 ~ 780293 (-)
G195098 NA other downstream 5070171 670736 ~ 676128 (-)
G199054 NA other upstream 343971 6097359 ~ 6097674 (-)
G199014 NA other upstream 610790 6364178 ~ 6375406 (-)
G199130 NA other upstream 824592 6577980 ~ 6594210 (-)
G199181 NA other upstream 1073297 6826685 ~ 6830453 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location