Gene
RNA
| Item | Value |
|---|---|
| gene id | G195074 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000046 |
| NCBI id | null |
| chromosome length | 7063170 |
| location | 44013 ~ 44252 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU221572 | True | 240 | lncRNA | 0.36 | 1 | 44013 | 44252 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000046_00035472_00036260 | NA | coding | downstream | 7329 | 34016 ~ 36684 (-) |
| CI01000046_00055148_00059869 | FNTA | coding | upstream | 10563 | 54815 ~ 59869 (-) |
| CI01000046_00063416_00065082 | NA | coding | upstream | 18901 | 63153 ~ 65082 (-) |
| CI01000046_00085822_00091135 | AURKB | coding | upstream | 40932 | 85184 ~ 91135 (-) |
| CI01000046_00224464_00306703 | FAT4 | coding | upstream | 180193 | 224445 ~ 306703 (-) |
| CI01000046_00332581_00354353 | ANKRD50 | coding | upstream | 288329 | 332581 ~ 354353 (-) |
| G195073 | NA | non-coding | downstream | 473 | 43327 ~ 43540 (-) |
| G195071 | NA | non-coding | downstream | 1410 | 42369 ~ 42603 (-) |
| G195070 | NA | non-coding | downstream | 4682 | 39050 ~ 39331 (-) |
| G195069 | NA | non-coding | downstream | 19166 | 24611 ~ 24847 (-) |
| G195065 | NA | non-coding | downstream | 32284 | 11399 ~ 11729 (-) |
| G195170 | NA | non-coding | upstream | 265376 | 309628 ~ 309850 (-) |
| G195172 | NA | non-coding | upstream | 267591 | 311843 ~ 312123 (-) |
| G195176 | NA | non-coding | upstream | 279597 | 323849 ~ 324062 (-) |
| G195189 | NA | non-coding | upstream | 332669 | 376921 ~ 377161 (-) |
| G195194 | NA | non-coding | upstream | 343875 | 388127 ~ 388544 (-) |
| G195097 | NA | other | upstream | 363171 | 407423 ~ 426326 (-) |
| G195098 | NA | other | upstream | 626484 | 670736 ~ 676128 (-) |
| CI01000046_00777923_00780186 | RPC11, POLR3K, POLR3K.S | other | upstream | 733481 | 774434 ~ 780293 (-) |
| G196463 | NA | other | upstream | 2124014 | 2168266 ~ 2168644 (-) |
