G196107


Basic Information

Item Value
gene id G196107
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 2437850 ~ 2481044 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU222724
CCTTTTTTTTTTTTTTTTTTCAAGGTAAGAAAATATAACTTTAATCTTATGACATATGAAAGACCATCCATTATACAGAGGCAAAAAGGAGTGATCTTGAACAGTACTCTGTTTTAACAAAAAAAATTCAAGCGTTTCAAACTTTGTGCAGTAACAACAGCACTTAACATTGTCTACACAGGTATCTTGGGTATATCTAAATTCACAAGAGACAAGCCAAGTTTTTAGTTAAAATTGCACAGATACGTCATTTGTCCTCATCTAGTGCGTTAGCCATTTCATCTCCTGTTTACCAAACTTGGCAGCCTTTGATCATATCTTTGACAGTTTTCATAGTTTCAGCACTGTTGTCTTTAAGTGAAAGGCCCAACAGGACCGGTCGGTTGCCTGATTCCTGTGAGACAAATGTTGTGACATTCTTGGCGTAGACGTGTGTAAGAGGCTGCAAAAGAGACAAAAAAGCCAAGGTGAAATACAAACATGATTTTATCTGCCATACTGACAATCCAAAAAAAAAAAAAAAAAGTACTTCAGAACATACCTCATCCTTTCCCAGCAGTACTCTGGTTGTGAACATGGGTACACTGATGTCACCAGACCTTGTGTCAGGTGTTATGGACAAAAGTGTCCCAATTTTACCATACTGTGTCAGAACTATAAAAATGTAGTTGCTGAATTCCGTGCAGACAACTTGAGTTGGTATTCCGTTTATTGTTTTTTCCATCTGTTTTGATCGAATGGCGGATTGAGGAGCCATTATTTACTTAGTTACACCTGAAAATAAATACGTTTAGTTAGAAACAGACGACCAAATAAGTCAGTGACAAAACTCTAACAACTGAAAAAGTTAAAAACGAGAAATACATAGGAATAATTTTTTAAGTAATAAGCAAATAGAAAAGAAGGAGCAAGATTCGCTCATTCATTCAGCTCGGTGTAGCAGAAGCACGAAACTACAGCGACAGCAGGCCGCATGATATCGCTGACATTTAGCTTGTCAAAAGCGGTCAGACGACACAGGAAACACCGAGGCTTCAGAGTCTCAAGCTGAGCGCTAGATATAAGAACTGTGATATCTGCAATAACCTCATGGTATTCAAAGATACAATATAAACTGTTAAAAAAATAGCACAGAAGTAGCAAACCTTTCTCACCGCTAGTATAAAGTCATAAATTATCTTCTTATGTTCAATGTGAATCCGTTTGCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU222724 True 1208 lncRNA 0.37 2 2437850 2481044

Neighbor

gene id symbol gene type direction distance location
CI01000046_02365658_02365816 NA coding upstream 71664 2365658 ~ 2366186 (+)
CI01000046_02356713_02359204 NA coding upstream 77841 2356654 ~ 2360009 (+)
CI01000046_02335530_02348525 NA coding upstream 88905 2333974 ~ 2348945 (+)
CI01000046_02264732_02268319 UNCX coding upstream 169212 2264572 ~ 2268638 (+)
CI01000046_02123765_02158243 AXIN1 coding upstream 279607 2123765 ~ 2158243 (+)
CI01000046_02616123_02661535 NA coding downstream 135003 2616047 ~ 2661964 (+)
CI01000046_02674254_02676647 ELFN1, ELFN1A coding downstream 193016 2674060 ~ 2676801 (+)
CI01000046_02794245_02796188 NA coding downstream 312835 2793879 ~ 2797088 (+)
CI01000046_02868880_02871348 NUDT1, 8ODP coding downstream 387836 2868880 ~ 2871611 (+)
CI01000046_02911888_02930362 NA coding downstream 430101 2911145 ~ 2930993 (+)
G196209 NA non-coding upstream 51606 2385750 ~ 2386244 (+)
G196177 NA non-coding upstream 135772 2301855 ~ 2302078 (+)
G196176 NA non-coding upstream 136054 2301426 ~ 2301796 (+)
G196164 NA non-coding upstream 154084 2283538 ~ 2283766 (+)
G196156 NA non-coding upstream 173788 2263831 ~ 2264062 (+)
G196122 NA non-coding downstream 156954 2637998 ~ 2689802 (+)
G196123 NA non-coding downstream 168244 2649288 ~ 2749966 (+)
G196687 NA non-coding downstream 283824 2764868 ~ 2765242 (+)
G196691 NA non-coding downstream 294327 2775371 ~ 2775660 (+)
G196703 NA non-coding downstream 310917 2791961 ~ 2792212 (+)
CI01000046_01865451_01881353 NA other upstream 478702 1865451 ~ 1881369 (+)
CI01000046_01540075_01668012 HS3ST4 other upstream 874513 1539494 ~ 1668012 (+)
G195003 NA other upstream 1276160 1161157 ~ 1161690 (+)
G194721 NA other upstream 1977505 458008 ~ 460345 (+)
G196936 NA other downstream 705951 3186995 ~ 3194271 (+)
CI01000046_03943890_03945302 ATP5J2 other downstream 1462784 3943794 ~ 3945500 (+)
G197055 NA other downstream 1668379 4149423 ~ 4149780 (+)
G197121 NA other downstream 1889967 4371011 ~ 4371430 (+)
G196869 NA other downstream 1934486 4415530 ~ 4421687 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G22845 NA non-coding NC_035899.1 CM008302.1 31547750 ~ 31548100 (+)