G198426


Basic Information

Item Value
gene id G198426
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 4010740 ~ 4011325 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU225225
GATGAGTAATTAATAACAGAAATTTCATTTTTAGGTGAACTAACCGTTTAAGGCACATTCACTCCATGAAAAATAACTATATCAGTGTCCACACTAGCAGATTATATCATTCTGTTTATTATAAGCACGCGCTGCAGTTTTGTCATCTGCCGTTTTAAAAGCTTGAGCCCCTAAAGCAGGATGGATTCTGATTGGCTGTCAATGTTTTTATCATTCAACAGCTAGAAAAAAAATCTTCTGAAAGTGATCCCAACAATATCGGTTCTCTGTTTCTCGTTATAGTTGTGATGTGGACTCTGCTATTCTTTTATATTTAAGTGAAAAGTGAAAGTGACATGTGGCCAAGCATGGTGTCACAAATTTGTGCTCTGCATTTCACCCATCCAAGTGCACACACTAGTGAACACACATAGACACTCTGAATACACAACCGGAGCAGTGGGCAGTCGTTTTTGCTGCGGCGCCTGGGGAGCGATTGAGGGTTAGGTGGGTAATGAGAGTGGAAGAGAGCGCTGTTCATTCACTCTCACTACCTAAATTTCCTGCTAGTACTAAGACTCGAACCCACGACCTTCAGGTTACAAGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU225225 True 586 lncRNA 0.41 1 4010740 4011325

Neighbor

gene id symbol gene type direction distance location
CI01000046_03967726_03970443 NA coding downstream 40027 3967457 ~ 3970713 (-)
CI01000046_03951775_03952660 BUD31, BUD31.L, BRAFLDRAFT_113775 coding downstream 57697 3951181 ~ 3953043 (-)
CI01000046_03946243_03948935 CPSF4 coding downstream 61196 3946230 ~ 3949544 (-)
CI01000046_03920813_03930435 SLC29A4 coding downstream 80106 3920235 ~ 3930634 (-)
CI01000046_03825822_03873637 TNRC18 coding downstream 135781 3825165 ~ 3874959 (-)
CI01000046_04013708_04017841 SYNGR3, SYNGR3A coding upstream 583 4011908 ~ 4017841 (-)
CI01000046_04021483_04023514 GFER coding upstream 9133 4020458 ~ 4023514 (-)
CI01000046_04125918_04128585 CCDC97 coding upstream 114562 4125887 ~ 4128585 (-)
CI01000046_04136250_04185791 CACNA1H, CACNA1HA coding upstream 124530 4135855 ~ 4185848 (-)
CI01000046_04279865_04297801 EPN2 coding upstream 268540 4279865 ~ 4297801 (-)
G198417 NA non-coding downstream 13333 3982658 ~ 3997407 (-)
G198429 NA non-coding downstream 16042 3992433 ~ 3994698 (-)
G198423 NA non-coding downstream 19616 3990104 ~ 3991124 (-)
G198438 NA non-coding downstream 94811 3915693 ~ 3915929 (-)
G198435 NA non-coding downstream 98338 3912198 ~ 3912402 (-)
G198459 NA non-coding upstream 16329 4027654 ~ 4027938 (-)
G198457 NA non-coding upstream 19456 4030781 ~ 4031323 (-)
G198460 NA non-coding upstream 20470 4031795 ~ 4049740 (-)
G198469 NA non-coding upstream 38575 4049900 ~ 4057116 (-)
G198476 NA non-coding upstream 46139 4057464 ~ 4057814 (-)
G198265 NA other downstream 210639 3665243 ~ 3800101 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other downstream 1142946 2866070 ~ 2867794 (-)
G196463 NA other downstream 1842096 2168266 ~ 2168644 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other downstream 3230447 774434 ~ 780293 (-)
G195098 NA other downstream 3334612 670736 ~ 676128 (-)
G199054 NA other upstream 2086034 6097359 ~ 6097674 (-)
G199014 NA other upstream 2352853 6364178 ~ 6375406 (-)
G199130 NA other upstream 2566655 6577980 ~ 6594210 (-)
G199181 NA other upstream 2815360 6826685 ~ 6830453 (-)

Expression


Co-expression Network