G198579


Basic Information

Item Value
gene id G198579
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 4432215 ~ 4433116 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU225401
CAAAGGCAGAGGCATAAACAGGGATAGGCAATGGTCGAGGCAGGCGGCAGACAAACAGAATCAGGGTACAGGCAAGGATCAGGGCAGGCAGCAAAACAATCACAGTCCAGGAAACAGGCAAAGATCAGGGTAGGCAGCAAAGGGTCGCAGGGAATAAACAGTCCACAGAAAAACGCTCAGAAATGATCACCAAGGCAAATCAAGACTTCGCGATGTGTGTGTGTGTGTGTGTGTATATGTGTGTCTTAAATAGTGTGATGCGGTGCAGGTGTGTGTGCAATCAGTCCCAGGAATGAGGGCCCATGGGAAACGTAGTCCGAATGAGAACTGATCAGTATTCCGGTAATAGCTCCCTCCGGCGGTCCGGAGGAAGGGCCGAGGGAGCCACATTCGTGACAATTGGCAGTTACTTTCTGTATTTTTGCCCCATCAATAAGTGAAACATTTCTAATAGTCGAGTGATTTATTGAATCATTTATTCAACTGATACATGCAAAAACACAAATTCATTTAGGAACAAAACACTACTACTTGCTCAGAGACATGCAGTGCTTTTACTGTGGCTTAAAAACTAAACTTCCATGCTGAGAAAATTAGGAAAACATCCAAGGAGGTCAGCTGTAACACTGTTATAAAAATATGCAGTCCTGTGTTGAATGCACTGATTTATTATTATTAAGAGCATAACATCTCAAAATAGATACTGAACTGATACATACAGTTAATCAGGGTATAAAATGTATCAGTTTATTTCACTTAAATGTAGGCCTAATATCTAATTAAATATAAATGTTGTAAAAAGTGAATAAGTGAAAAGCACTGCTTATCTTCAAACAATGTGTTTCAAACGTGGAGAAATGTGGAAAAAATGTAGTATTTGTAGTATGTACATATTTCATGTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU225401 True 902 lncRNA 0.40 1 4432215 4433116

Neighbor

gene id symbol gene type direction distance location
CI01000046_04415076_04421680 NA coding downstream 10525 4414770 ~ 4421690 (-)
CI01000046_04374630_04379582 NA coding downstream 52627 4374510 ~ 4379588 (-)
CI01000046_04352237_04355463 ALDOAA, ALDOA, ALD, ALDOAB coding downstream 76724 4351849 ~ 4355491 (-)
CI01000046_04345411_04345806 NA coding downstream 86409 4345202 ~ 4345806 (-)
CI01000046_04336982_04343632 NA coding downstream 88161 4336705 ~ 4344054 (-)
CI01000046_04440916_04442340 NA coding upstream 7442 4440558 ~ 4442359 (-)
CI01000046_04640883_04644188 TMEM98 coding upstream 206117 4639233 ~ 4644521 (-)
CI01000046_04647083_04657110 NA coding upstream 213394 4646505 ~ 4657274 (-)
CI01000046_04685212_04689255 NA coding upstream 252069 4685185 ~ 4689375 (-)
CI01000046_04704175_04710872 NA coding upstream 270246 4703362 ~ 4710872 (-)
G198585 NA non-coding downstream 9917 4422094 ~ 4422298 (-)
G198582 NA non-coding downstream 24974 4407029 ~ 4407241 (-)
G198555 NA non-coding downstream 36674 4395174 ~ 4395541 (-)
G198550 NA non-coding downstream 41675 4390184 ~ 4390540 (-)
G198548 NA non-coding downstream 44074 4387909 ~ 4388141 (-)
G198592 NA non-coding upstream 3480 4436596 ~ 4436800 (-)
G198599 NA non-coding upstream 11318 4444434 ~ 4444789 (-)
G198600 NA non-coding upstream 11794 4444910 ~ 4445140 (-)
G198601 NA non-coding upstream 12138 4445254 ~ 4445534 (-)
G198602 NA non-coding upstream 12604 4445720 ~ 4446256 (-)
G198265 NA other downstream 632114 3665243 ~ 3800101 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other downstream 1564421 2866070 ~ 2867794 (-)
G196463 NA other downstream 2263571 2168266 ~ 2168644 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other downstream 3651922 774434 ~ 780293 (-)
G195098 NA other downstream 3756087 670736 ~ 676128 (-)
G199054 NA other upstream 1664243 6097359 ~ 6097674 (-)
G199014 NA other upstream 1931062 6364178 ~ 6375406 (-)
G199130 NA other upstream 2144864 6577980 ~ 6594210 (-)
G199181 NA other upstream 2393569 6826685 ~ 6830453 (-)

Expression


Co-expression Network