Gene
RNA
| Item | Value |
|---|---|
| gene id | G198572 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000046 |
| NCBI id | null |
| chromosome length | 7063170 |
| location | 4449702 ~ 4449936 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU225394 | True | 235 | lncRNA | 0.49 | 1 | 4449702 | 4449936 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000046_04440916_04442340 | NA | coding | downstream | 7343 | 4440558 ~ 4442359 (-) |
| CI01000046_04415076_04421680 | NA | coding | downstream | 28012 | 4414770 ~ 4421690 (-) |
| CI01000046_04374630_04379582 | NA | coding | downstream | 70114 | 4374510 ~ 4379588 (-) |
| CI01000046_04352237_04355463 | ALDOAA, ALDOA, ALD, ALDOAB | coding | downstream | 94211 | 4351849 ~ 4355491 (-) |
| CI01000046_04345411_04345806 | NA | coding | downstream | 103896 | 4345202 ~ 4345806 (-) |
| CI01000046_04640883_04644188 | TMEM98 | coding | upstream | 189297 | 4639233 ~ 4644521 (-) |
| CI01000046_04647083_04657110 | NA | coding | upstream | 196574 | 4646505 ~ 4657274 (-) |
| CI01000046_04685212_04689255 | NA | coding | upstream | 235249 | 4685185 ~ 4689375 (-) |
| CI01000046_04704175_04710872 | NA | coding | upstream | 253426 | 4703362 ~ 4710872 (-) |
| CI01000046_04777328_04800857 | NA | coding | upstream | 327392 | 4777328 ~ 4800857 (-) |
| G198604 | NA | non-coding | downstream | 396 | 4448903 ~ 4449306 (-) |
| G198603 | NA | non-coding | downstream | 2478 | 4446960 ~ 4447224 (-) |
| G198602 | NA | non-coding | downstream | 3446 | 4445720 ~ 4446256 (-) |
| G198601 | NA | non-coding | downstream | 4168 | 4445254 ~ 4445534 (-) |
| G198600 | NA | non-coding | downstream | 4562 | 4444910 ~ 4445140 (-) |
| G198605 | NA | non-coding | upstream | 1266 | 4451202 ~ 4451511 (-) |
| G198606 | NA | non-coding | upstream | 1626 | 4451562 ~ 4451882 (-) |
| G198607 | NA | non-coding | upstream | 3236 | 4453172 ~ 4453394 (-) |
| G198608 | NA | non-coding | upstream | 4633 | 4454569 ~ 4454876 (-) |
| G198609 | NA | non-coding | upstream | 5232 | 4455168 ~ 4455377 (-) |
| G198265 | NA | other | downstream | 649601 | 3665243 ~ 3800101 (-) |
| CI01000046_02866255_02867695 | MRM2, FTSJ2 | other | downstream | 1581908 | 2866070 ~ 2867794 (-) |
| G196463 | NA | other | downstream | 2281058 | 2168266 ~ 2168644 (-) |
| CI01000046_00777923_00780186 | RPC11, POLR3K, POLR3K.S | other | downstream | 3669409 | 774434 ~ 780293 (-) |
| G195098 | NA | other | downstream | 3773574 | 670736 ~ 676128 (-) |
| G199054 | NA | other | upstream | 1647423 | 6097359 ~ 6097674 (-) |
| G199014 | NA | other | upstream | 1914242 | 6364178 ~ 6375406 (-) |
| G199130 | NA | other | upstream | 2128044 | 6577980 ~ 6594210 (-) |
| G199181 | NA | other | upstream | 2376749 | 6826685 ~ 6830453 (-) |
