RNA id: TU225394


Basic Information

Item Value
RNA id TU225394
length 235
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G198572
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 4449702 ~ 4449936 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTGGATACGGAGGTATTCCAACAAGGCAAAATGCAACTCCATTCATTGGACAGCTTAACTTGTTTTGTAGGGGGATCCGGGGGGTCGCGATTAAGATTATTGTGAAAGAAGTGTGCTATGAGCTATTTATCTTAAACCGTGGCGTTCACCTATCCAGTTTTCTTCCGCCCGCTCGTCTCTTTCCCGTTGTTTGCCCGCAGTGCCCTCCCTTTTCCCTCGCCCGATGCAAATCCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225427 lncRNA downstream 396 4448903 ~ 4449306 (-) True G198604
TU225426 lncRNA downstream 2478 4446960 ~ 4447224 (-) True G198603
TU225425 lncRNA downstream 3446 4445720 ~ 4446256 (-) True G198602
TU225424 lncRNA downstream 4168 4445254 ~ 4445534 (-) True G198601
TU225423 lncRNA downstream 4562 4444910 ~ 4445140 (-) True G198600
TU225428 lncRNA upstream 1266 4451202 ~ 4451511 (-) True G198605
TU225429 lncRNA upstream 1626 4451562 ~ 4451882 (-) True G198606
TU225430 lncRNA upstream 3236 4453172 ~ 4453394 (-) True G198607
TU225431 lncRNA upstream 4633 4454569 ~ 4454876 (-) True G198608
TU225432 lncRNA upstream 5232 4455168 ~ 4455377 (-) True G198609
CI01000046_04440916_04442340.mRNA mRNA downstream 7343 4440558 ~ 4442359 (-) True CI01000046_04440916_04442340
CI01000046_04415076_04421680.mRNA mRNA downstream 28012 4414770 ~ 4421690 (-) True CI01000046_04415076_04421680
CI01000046_04374630_04379582.mRNA mRNA downstream 70114 4374510 ~ 4379588 (-) True CI01000046_04374630_04379582
CI01000046_04352237_04355463.mRNA mRNA downstream 94211 4351849 ~ 4355491 (-) True CI01000046_04352237_04355463
CI01000046_04345411_04345806.mRNA mRNA downstream 103896 4345202 ~ 4345806 (-) True CI01000046_04345411_04345806
CI01000046_04640883_04644188.mRNA mRNA upstream 189297 4639233 ~ 4644521 (-) True CI01000046_04640883_04644188
CI01000046_04647083_04657110.mRNA mRNA upstream 196574 4646510 ~ 4657274 (-) False CI01000046_04647083_04657110
CI01000046_04685212_04689255.mRNA mRNA upstream 235249 4685185 ~ 4689375 (-) False CI01000046_04685212_04689255
CI01000046_04704175_04710872.mRNA mRNA upstream 253426 4703362 ~ 4710872 (-) False CI01000046_04704175_04710872
CI01000046_04777328_04800857.mRNA mRNA upstream 327392 4777328 ~ 4800857 (-) True CI01000046_04777328_04800857
TU225032 other downstream 649601 3757623 ~ 3800101 (-) False G198265
TU224633 other downstream 1581908 2866259 ~ 2867794 (-) True CI01000046_02866255_02867695
TU223112 other downstream 2281058 2168266 ~ 2168644 (-) True G196463
TU221589 other downstream 3669409 777733 ~ 780293 (-) True CI01000046_00777923_00780186
TU221617 other downstream 3773574 670736 ~ 676128 (-) True G195098
TU225919 other upstream 1647423 6097359 ~ 6097674 (-) True G199054
TU225878 other upstream 1914242 6364178 ~ 6375406 (-) True G199014
TU226000 other upstream 2128044 6577980 ~ 6592925 (-) False G199130
TU226079 other upstream 2376749 6826685 ~ 6830453 (-) True G199181

Expression Profile