CI01000047_02265701_02270952 (PCDH15)


Basic Information

Item Value
gene id CI01000047_02265701_02270952
gene name PCDH15
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 2265701 ~ 2271665 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_02265701_02270952.mRNA
GAACTCTCTATGGAATCTGGCATTGACCCAGGACAAGACTATTATACACAGGATTACTATAACTATGACCATGGCTATGACTTGCCTCAGTATGGAAGTCGACGGAAGCTGATCTCTCCAACAGGGATGTATGATGAATATGGAGAGGTGATTATGGAAGATGATGGCAGCTACTATTACAGCCCACACGAATCTGAGGGAGAGGTTGTGAGGCAAGGCAGAAGGCTAGCTCCACCACCAGGAAAGTCTCCACCACGGAGGCCCCCTAGACTAGCTTTTGGAGACCAACCTCCAATGCTTGAGAAACACCTGCCTGGACCAGCTGAGGGCATCACACATCCTTACGGCTCAAAGGCTGAAGCGACACTTAAAGCACCCATACAACTCAGCCAAATGTTTGACAGAAGGTCAGGCCCAGCTCCAGCTCCATTCCAACTCCCGTGGAAGAACAACAAAATATTTCCGATTGTACTTCCTGAGGAGAAAGCAGGAAGTACTGATGACTCCAAACCAACCAGGATGCAGCATTCAAACCTTGTGGACAATGGCATGGTCATTGATGGCAGCTATTTCCAGACTAAAGAAGCAATGCCTTCAGCAAAGACAAGACTTGGCAAAGTTTTGAGTCAGATGAACATCTTTAAAACATTGCAGACTCAAAAGAACACTCTGAGCAGCATTAGTGGGAGTGTAGATCATGGGAGTAATGTGAACGCCTCAATCTCTTGGGTACTCAACGAGTCAGAGAGGGAATCACAGAGAATCCCTGGTGATATTGCGGAGAGTGAGCAAGAAAGAGGTAGAAACAGGGAAGACATCATTCAGCAGTCTTACACTGGAAGTGCCATGTCGTTCACACCTTACCATCCGTCTTCCCAGTCCAGACAGAGCAGCACAACCTCTGAAAGCATCAATTTCAAAGCTGGTTTTCCCGGCAGTGGTACCCAGAGATCAGCAACCTACAGGCAAAAGAGCAGCAGATCATCTCGAGAACCTGCAACTACTTTCACCCACACCAGAGCATTAGAAGAGACCATCCTGAAGGAGGATGAGGAAGATAAGGAAGGCAAAGGGCAGTTGAAAGAAGGTGACTCTGAGGGCCAAAATAAGGATCCAAAGTCCTCTATGTCTAAAAGCAGCTATTCTCCGGAAAGTAGACGAGATTTGAGCTTCCACAGCATGAGCAGCTTCTCAACGGCCAGCAGTAGTGTAGCAAGGGCTTTAGAGATCGACAAACTTTCTCCTATAGATGAGAACGAAGAAGGGGAAATGACTCCAGAGAGAGGTGGAAGCCCTGGTGATAGTTCAAGCTCTTCGGATGGAGCAAGAATCCTTAAAGTAGATGGGGAGGATGAGGATTCTAATTCAGATGCAGTTGAGACTTACGGTAGAAAAAAGAGGATCAAGCTAATTGTAGACCGTGAATACGAGACCAGTTCAACTGGAGAAGAAAGTGCACCTGAATCGCACAGGAACCGACTATCTAATGTGAACAGCCACAGCAACATTAATGGGAGCATATACTTGGCCCAGAACGGCTCAATAATCCGGACACGACGGGTCGCACACACCAACAACATCAAGCTCAACTCTCCAGTACGACTGGGAAAGCACTTTAAGAAACTGGACAAACTTGCTGTTACGCATGAAGAGCGAATTCCTTTAAACAGCCCCATAATCACAGGCGCCTCAGCAGGTGAACAGAACCTCACGACCAGGCCCTCCAGTGGGTCTCTGGCCTCCAGCACCACAGGCCCAGAGAGTATAGCTTCAAAATCAAATGTGGTGAATGGTGGGGGTGAAAGAATACAAAATGTGGATGAACAAGAGTCCACAGTGGACAATCAGGAGGTGAGGGACCCTTTAGGATCACATAGTGACCGTACCCAGTCAGATGAGGAGGAGCTCTGGATGGGTCCTTGGAATAACCTGCACATACCAATGACAAAACTGTGACTTACAAACAGACGCTCTATTGTCTTAAAGAACGTAAGGGAGATAAACTGAATTTGCAGCATAAAATGATAAAATTGCACTTAAATTCATTCAGTATTATATTTGCTTTTCCATGGCCCTGAACAATGAGCTTCTCAGTGATTGTTGCATTCATAAGTACCTTAAAAATCAAACACTTGTTTTTTGCCCATTGATTGTCGCCTATCAGTACTTCTTTTTAATAATTATTATTTGGAATTTGTTATCAATGTATTGTATGCTTTCATAAATACATTTTTGTGCTTTTTACAGTTTAAAAGGCAAAAACAATTGTCTGCTGAAGTGTATTTTTGGTAAATAGTCAATGAAAATAATTGTGATGAATCTAAGGAGCACTTGTGCGCCTTACATTTGCTTAATGCCACAGTCATTTGAATGGACTTGCACCAGAGTTCAAATTGCTATATTTTTGTGCTTTTTTATACCGAGTTCTATCAAAACAGAATTATTCAGTATATGGTCACATTCTGTTTCAGACACTTGCCAAACTGAAGAGAACAACTTTTGTTGTTGTTGTTTTATTTTTATTTTATTTCATTTTACTTAATTTTTTTATTATTATTATTTTTGGCAGGCTGGTATATATATGAGAAAGCAATGCAGAAACTGCTCTCATTGTGCAGCCTTTGATAATATCTGGCTGTTTCTACAAAGCAGAGAAACAGGCACATCAA

Function

symbol description
pcdh15 Predicted to enable calcium ion binding activity and protein N-terminus binding activity. Involved in equilibrioception; photoreceptor cell maintenance; and sensory perception of light stimulus. Acts upstream of or within sensory perception of sound. Located in extracellular space; photoreceptor outer segment; and synapse. Implicated in Usher syndrome type 1D; Usher syndrome type 1F; and autosomal recessive nonsyndromic deafness 23.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_02265701_02270952.mRNA True 2669 mRNA 0.43 5 2265701 2271665

Neighbor

gene id symbol gene type direction distance location
CI01000047_02233861_02257560 NA coding upstream 7279 2233593 ~ 2258422 (+)
CI01000047_02105957_02212505 PCDH15B, PCDH15 coding upstream 53187 2105957 ~ 2212514 (+)
CI01000047_01838291_01856228 IPMK coding upstream 409112 1837443 ~ 1856589 (+)
CI01000047_01831728_01834017 UBE2D4, UBE2D4.L, UBE2D1A, UBE2D1B, UBE2D1 coding upstream 431684 1831728 ~ 1834017 (+)
CI01000047_01814588_01822344 NA coding upstream 442766 1814488 ~ 1822935 (+)
CI01000047_02496216_02496407 NA coding downstream 224551 2496216 ~ 2496521 (+)
CI01000047_02498979_02505234 A1CF coding downstream 226909 2498574 ~ 2505743 (+)
CI01000047_02562428_02569496 AARSD1 coding downstream 290628 2562293 ~ 2570388 (+)
CI01000047_02581276_02587652 G6PCA.1 coding downstream 309254 2580919 ~ 2589521 (+)
CI01000047_02602977_02614833 MYST2, KAT7B, KAT7 coding downstream 331312 2602977 ~ 2615082 (+)
G199895 NA non-coding upstream 255701 2009676 ~ 2010000 (+)
G199875 NA non-coding upstream 313396 1952051 ~ 1952305 (+)
G199850 NA non-coding upstream 356489 1908704 ~ 1909212 (+)
G199841 NA non-coding upstream 376425 1888628 ~ 1889276 (+)
G199838 NA non-coding upstream 382261 1883215 ~ 1883440 (+)
G200005 NA non-coding downstream 50962 2322627 ~ 2322840 (+)
G200006 NA non-coding downstream 51295 2322960 ~ 2325338 (+)
G200015 NA non-coding downstream 63437 2335102 ~ 2335321 (+)
G200016 NA non-coding downstream 63695 2335360 ~ 2335799 (+)
G200017 NA non-coding downstream 64602 2336267 ~ 2336468 (+)
CI01000047_01749606_01752688 NA other upstream 512864 1749606 ~ 1752688 (+)
G199386 NA other upstream 1300245 929871 ~ 965456 (+)
CI01000047_00773429_00831230 EXOC6 other upstream 1433091 773429 ~ 832610 (+)
G199401 NA other upstream 1448617 816480 ~ 817084 (+)
G199380 NA other upstream 1804025 460019 ~ 461676 (+)
G200003 NA other downstream 45198 2316863 ~ 2318962 (+)
G200076 NA other downstream 248931 2520596 ~ 2577997 (+)
G201186 NA other downstream 747040 3018705 ~ 3088187 (+)
G201387 NA other downstream 1424851 3696516 ~ 3701860 (+)
G201599 NA other downstream 2144148 4415813 ~ 4482457 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005153 si:ch211-253p2.2 coding NC_007123.7 CM002896.2 6542789 ~ 6551681 (-)
rainbow trout (Oncorhynchus mykiss) pcdh15b LOC106589399 misc NC_048584.1 CM023238.2 11909546 ~ 12124625 (+)