G202733


Basic Information

Item Value
gene id G202733
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3132313 ~ 3133652 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU230047
ATGAGTTCAAGACAACCTTTGATAAAACTTTGGTGATAGCGAGTTTACTAGATCGATCACTGAAATCAATAATTAATTCATACTTGGTTTTTTTCAAAGTTTATTTGAAAAAAAGAAAGAAAGAAAAAAAAACCTTACACCATGCACTTAATTGTGCATTAAAAATGATTATTACACATTTTCACTTTTGCTTTGTGCAAAATTATTATGCATTCTCTTTTATTAAGTAATATGCTTATTTTTGGTATTTACATATCAGCTAGAAATATAAAACTTGACAGATTACATCCTCAGAAGCTCTTTCGTGCAGTGGTCATTTAGGCAGCGTCACAGAAACCTGCACAATTAAAAAAGAAAAACACATCAGATCTTTTGCATACTGAACAATGTCTGATCATGAGTGCATGTACGTGATAATAACACATCTTACCAGTGTGTGCGACACGTCTGTATTTGCCCAGGAAGCAGATCTCCTGTTTCTTCTCTGTCACAATCTTCTGGTCTTCAGGCCTGAGGCCTTCAGGGTGTCTGGAGAATATGAAGGAATAACCGTCCAAGCAGGTTCCGTTCTCATCAAGCTCTCTGCAGGAGTAGTGGATGGCATAGTTTTCATAGTCGGTGTCAATGATCCAGTGGTCATCATCCAGTCTGGAGATATGCAGCAGCTCCCCAGTATTTCATCTTGAACCTGGCGGGGTCTTCGGTATCTTCAAACGTGCCAAACATGTTGGCGCACACCTCCCAGTTGCTGAAGAGTGAAACGGCATGCAAGAATTGAATCGTTTTTATTGCGCAAGTGCACGACATTAACATAAAATCCCATTTAAACTCACTTGAGAATGATGACTCTGCCAACAGCGGTGGCTGTCATGGTTCCATCTTCCTCCACTTTGAAATGGGCAACAATATTATCAAGAAGGAAAAGACCAACGGGGTCTTTCTTGGCCACGGCATACCATGTTCCTTGATACTGCAAGGTCAGTGGAAAAGTATGAGGAACAGAAGCTCAAAAACAACATGTGGTTGAAGCAAAACACTGGTTGACTTACCCTCGTCCTGTCAAATTCCTGTTTGACGGTGATGTTGCTCACCAGACAGTCCTGCGCCCAGCATGTGGCCAGGACACAGAGAACTATGCAGAACCTGAGCATGGTGCCTCTGTGCTCGAGCTGTGAAAAATCAGTAGAACAGTTAGAAAAACACCAACAAATGCACCGCTTAGTCGTCCGTCAAACAAATCCTAATGTGCGTACCTTGATCACGG
>TU230049
ATGAGTTCAAGACAACCTTTGATAAAACTTTGGTGATAGCGAGTTTACTAGATCGATCACTGAAATCAATAATTAATTCATACTTGGTTTTTTTCAAAGTTTATTTGAAAAAAAGAAAGAAAGAAAAAAAAACCTTACACCATGCACTTAATTGTGCATTAAAAATGATTATTACACATTTTCACTTTTGCTTTGTGCAAAATTATTATGCATTCTCTTTTATTAAGTAATATGCTTATTTTTGGTATTTACATATCAGCTAGAAATATAAAACTTGACAGATTACATCCTCAGAAGCTCTTTCGTGCAGTGGTCATTTAGGCAGCGTCACAGAAACCTGTGTGCGACACGTCTGTATTTGCCCAGGAAGCAGATCTCCTGTTTCTTCTCTGTCACAATCTTCTGGTCTTCAGGCCTGAGGCCTTCAGGGTGTCTGGAGAATATGAAGGAATAACCGTCCAAGCAGGTTCCGTTCTCATCAAGCTCTCTGCAGGAGTAGTGGATGGCATAGTTTTCATAGTCGGTGTCAATGATCCAGTGGTCATCATCTGCGGAACGGTCACAAACAGGTCATGAGCAGATGATCTAACATGTGATTTGCACATGATAAATTGACACTCACATCCAGTCTGGAGATATGCAGCAGCTCCCCAGTATTTCATCTTGAACCTGGCGGGGTCTTCGGTATCTTCAAACGTGCCAAACATGTTGGCGCACACCTCCCAGTTGCTGAAGAGTGAAACGGCATGCAAGAATTGAATCGTTTTTATTGCGCAAGTGCACGACATTAACATAAAATCCCATTTAAACTCACTTGAGAATGATGACTCTGCCAACAGCGGTGGCTGTCATGGTTCCATCTTCCTCCACTTTGAAATGGGCAACAATATTATCAAGAAGGAAAAGACCAACGGGGTCTTTCTTGGCCACGGCATACCATGTTCCTTGATCCTCGTCCTGTCAAATTCCTGTTTGACGGTGATGTTGCTCACCAGACAGTCCTGCGCCCAGCATGTGGCCAGGACACAGAGAACTATGCAGAACCTGAGCATGGTGCCTCTGTGCTCGAGCTGTGAAAAATCAGTAGAACAGTTAGAAAAACACCAACAAATGCACCGCTTAGTCGTCCGTCAAACAAATCCTAATGTGCGTACCTTGATCACGG
>TU230051
ATGAGTTCAAGACAACCTTTGATAAAACTTTGGTGATAGCGAGTTTACTAGATCGATCACTGAAATCAATAATTAATTCATACTTGGTTTTTTTCAAAGTTTATTTGAAAAAAAGAAAGAAAGAAAAAAAAACCTTACACCATGCACTTAATTGTGCATTAAAAATGATTATTACACATTTTCACTTTTGCTTTGTGCAAAATTATTATGCATTCTCTTTTATTAAGTAATATGCTTATTTTTGGTATTTACATATCAGCTAGAAATATAAAACTTGACAGATTACATCCTCAGAAGCTCTTTCGTGCAGTGGTCATTTAGGCAGCGTCACAGAAACCTGTGTGCGACACGTCTGTATTTGCCCAGGAAGCAGATCTCCTGTTTCTTCTCTGTCACAATCTTCTGGTCTTCAGGCCTGAGGCCTTCAGGGTGTCTGGAGAATATGAAGGAATAACCGTCCAAGCAGGTTCCGTTCTCATCAAGCTCTCTGCAGGAGTAGTGGATGGCATAGTTTTCATAGTCGGTGTCAATGATCCAGTGGTCATCATCTGCGGAACGGTCACAAACAGGTCATGAGCAGATGATCTAACATGTGATTTGCACATGATAAATTGACACTCACATCCAGTCTGGAGATATGCAGCAGCTCCCCAGTATTTCATCTTGAACCTGGCGGGGTCTTCGGTATCTTCAAACGTGCCAAACATGTTGGCGCACACCTCCCAGTTGAGAATGATGACTCTGCCAACAGCGGTGGCTGTCATGGTTCCATCTTCCTCCACTTTGAAATGGGCAACAATATTATCAAGAAGGAAAAGACCAACGGGGTCTTTCTTGGCCACGGCATACCATGTTCCTTGATACTGCAAGGTCAGTGGAAAAGTATGAGGAACAGAAGCTCAAAAACAACATGTGGTTGAAGCAAAACACTGGTTGACTTACCCTCGTCCTGTCAAATTCCTGTTTGACGGTGATGTTGCTCACCAGACAGTCCTGCGCCCAGCATGTGGCCAGGACACAGAGAACTATGCAGAACCTGAGCATGGTGCCTCTGTGCTCGAGCTGTGAAAAATCAGTAGAACAGTTAGAAAAACACCAACAAATGCACCGCTTAGTCGTCCGTCAAACAAATCCTAATGTGCGTACCTTGATCACGG
>TU230052
ATGAGTTCAAGACAACCTTTGATAAAACTTTGGTGATAGCGAGTTTACTAGATCGATCACTGAAATCAATAATTAATTCATACTTGGTTTTTTTCAAAGTTTATTTGAAAAAAAGAAAGAAAGAAAAAAAAACCTTACACCATGCACTTAATTGTGCATTAAAAATGATTATTACACATTTTCACTTTTGCTTTGTGCAAAATTATTATGCATTCTCTTTTATTAAGTAATATGCTTATTTTTGGTATTTACATATCAGCTAGAAATATAAAACTTGACAGATTACATCCTCAGAAGCTCTTTCGTGCAGTGGTCATTTAGGCAGCGTCACAGAAAACCAGTGTGTGCGACACGTCTGTATTTGCCCAGGAAGCAGATCTCCTGTTTCTTCTCTGTCACAATCTTCTGGTCTTCAGGCCTGAGGCCTTCAGGGTGTCTGGAGAATATGAAGGAATAACCGTCCAAGCAGGTTCCGTTCTCATCAAGCTCTCTGCAGGAGTAGTGGATGGCATAGTTTTCATAGTCGGTGTCAATGATCCAGTGGTCATCATCCAGTCTGGAGATATGCAGCAGCTCCCCAGTATTTCATCTTGAACCTGGCGGGGTCTTCGGTATCTTCAAACGTGCCAAACATGTTGGCGCACACCTCCCAGTTGAGAATGATGACTCTGCCAACAGCGGTGGCTGTCATGGTTCCATCTTCCTCCACTTTGAAATGGGCAACAATATTATCAAGAAGGAAAAGACCAACGGGGTCTTTCTTGGCCACGGCATACCATGTTCCTTGATACTGCAAGGTCAGTGGAAAAGTATGAGGAACAGAAGCTCAAAAACAACATGTGGTTGAAGCAAAACACTGGTTGACTTACCCTCGTCCTGTCAAATTCCTGTTTGACGGTGATGTTGCTCACCAGACAGTCCTGCGCCCAGCATGTGGCCAGGACACAGAGAACTATGCAGAACCTGAGCATGGTGCCTCTGTGCTCGAGCTGTGAAAAATCAGTAGAACAGTTAGAAAAACACCAACAAATGCACCGCTTAGTCGTCCGTCAAACAAATCCTAATGTGCGTACCTTGATCACGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU230047 False 1264 TUCP 0.42 2 3132313 3133652
TU230049 False 1165 lncRNA 0.42 3 3132313 3133652
TU230051 False 1157 lncRNA 0.43 3 3132313 3133652
TU230052 True 1084 TUCP 0.43 4 3132313 3133652

Neighbor

gene id symbol gene type direction distance location
CI01000047_03115498_03127047 PDE6C coding downstream 4208 3115187 ~ 3128105 (-)
CI01000047_03087382_03094014 LGI1B coding downstream 36296 3087080 ~ 3096017 (-)
CI01000047_03085017_03085558 NA coding downstream 46622 3084995 ~ 3085691 (-)
CI01000047_03080182_03082134 SLC35G1 coding downstream 50179 3080086 ~ 3082134 (-)
CI01000047_03002349_03064708 PLCE1 coding downstream 66626 3002349 ~ 3065687 (-)
CI01000047_03136341_03145907 CEP55L coding upstream 2260 3135912 ~ 3145907 (-)
CI01000047_03149971_03159412 PRRT2 coding upstream 16308 3149960 ~ 3159412 (-)
CI01000047_03163127_03175326 KIF22 coding upstream 29214 3162866 ~ 3175326 (-)
CI01000047_03177108_03216092 ARHGAP27 coding upstream 43431 3177083 ~ 3216132 (-)
CI01000047_03223945_03241971 NA coding upstream 89971 3223623 ~ 3242716 (-)
G202757 NA non-coding downstream 18335 3113282 ~ 3113978 (-)
G202792 NA non-coding downstream 32193 3097841 ~ 3100120 (-)
G202755 NA non-coding downstream 43613 3077993 ~ 3088700 (-)
G202747 NA non-coding downstream 159352 2966977 ~ 2972961 (-)
G202740 NA non-coding downstream 165714 2965854 ~ 2966599 (-)
G202847 NA non-coding upstream 198514 3332166 ~ 3334561 (-)
G202844 NA non-coding upstream 199198 3332850 ~ 3432629 (-)
G202842 NA non-coding upstream 266197 3399849 ~ 3407492 (-)
G202869 NA non-coding upstream 307175 3440827 ~ 3445116 (-)
G202870 NA non-coding upstream 311563 3445215 ~ 3445658 (-)
CI01000047_01708628_01744282 BICC1B, BICC1 other downstream 1416796 1706068 ~ 1744282 (-)
G200472 NA other downstream 2297842 833941 ~ 834471 (-)
CI01000047_00519408_00522108 PYYB other downstream 2610071 519108 ~ 522245 (-)
G200299 NA other downstream 2864278 267530 ~ 268035 (-)
G202944 NA other upstream 664151 3985342 ~ 3986402 (-)
CI01000047_04213574_04213976 NA other upstream 1079757 4213409 ~ 4214085 (-)
CI01000047_04285605_04286644 COA3A other upstream 1145256 4285227 ~ 4286694 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other upstream 1440683 4574335 ~ 4576342 (-)
G203286 NA other upstream 1740727 4874379 ~ 4876734 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location