CI01000047_04285605_04286644 (COA3A)


Basic Information

Item Value
gene id CI01000047_04285605_04286644
gene name COA3A
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 4285227 ~ 4286694 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_04285605_04286644.mRNA
ATTGACGTGCAAAGTAACCTCGCGTTGCGTCACAACACAGCGCTTCAAACATGGCAGACAAGAGTAGTCAAGGGGACTCCAAACCTGAAGCCCAGTTTGCAAAGAGAATAGACCCTGCAAAGGAAGATCTGACCAAGGAACAGTTGCAGTTCATCCGACAAGTGGAGCTGGCGCAATGGAAGAAGAATACAGGCAAGCTCCGGGGTCGAAACGTTGCGACAGGACTCGCTATCGGCGCTGTAGTGCTCGGCATCTGTATCCTTTACAACTGTGTTACACAAGATGGCTACACTTTCTATTCAGTATCCCAAGAAAAAATCATGGATGAAATAGATGAAGAAGCAAAAGCACGTGCTCCGAAGACCGGAGCCAACTGAATGAACTTTTATCTTCAGGAACTGTCTGCACTGACACGCAGTTGAGCGCGGGCGCCAGCAGAGGGCGCCACATCCATTCAAATAGTCTCCTGTTGGAACTGAGACTCGATATTTAATGAATACAAGGAGGAATCCTGCGTTTTTATAGTTTTCTATAAAAACGTGTTTCTGATATGCAGTTCATGGAATATGTTAGTATAGACATGGAAACTGAATGTCATAATATTCTCTGTTAAACTATGAATACTACAGTAATTCTACTGGTCTTCTTGCTTTGAGTGCAAATACATACACTATCAGAGTGAGATTAATTTAAATAATGGCCACCATTTTCTTTTATGTTTGTCTTCTTTTTTTTTTTTTAATGAATACAATAAA

Function

symbol description
coa3a Predicted to be involved in mitochondrial cytochrome c oxidase assembly and positive regulation of mitochondrial translation. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial inner membrane. Human ortholog(s) of this gene implicated in cytochrome-c oxidase deficiency disease. Orthologous to human COA3 (cytochrome c oxidase assembly factor 3).

GO:

id name namespace
GO:0033617 mitochondrial cytochrome c oxidase assembly biological_process

KEGG:

id description
K18175 CCDC56, COA3; cytochrome c oxidase assembly factor 3, animal type

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_04285605_04286644.mRNA False 755 mRNA 0.42 2 4285227 4286694

Neighbor

gene id symbol gene type direction distance location
CI01000047_04213574_04213976 NA coding downstream 71251 4213409 ~ 4214085 (-)
CI01000047_04137872_04142531 CABP5B, CABP5, CABP5A coding downstream 142696 4137599 ~ 4142531 (-)
CI01000047_04128025_04134725 NIF3L1 coding downstream 150502 4127902 ~ 4134725 (-)
CI01000047_04105620_04111019 NA coding downstream 174043 4105423 ~ 4111184 (-)
CI01000047_04022011_04032483 NA coding downstream 252561 4020885 ~ 4032666 (-)
CI01000047_04289186_04338565 NA coding upstream 2369 4289063 ~ 4339770 (-)
CI01000047_04345335_04375341 NA coding upstream 58433 4345127 ~ 4375434 (-)
CI01000047_04385029_04397861 NA coding upstream 97853 4384547 ~ 4397861 (-)
CI01000047_04398951_04431817 NA coding upstream 112257 4398951 ~ 4431817 (-)
CI01000047_04458864_04461672 NA coding upstream 172077 4458771 ~ 4462094 (-)
G203143 NA non-coding downstream 65494 4219397 ~ 4219733 (-)
G202991 NA non-coding downstream 108457 4130712 ~ 4176770 (-)
G202997 NA non-coding downstream 190335 4094355 ~ 4094892 (-)
G203085 NA non-coding downstream 191606 4093419 ~ 4093621 (-)
G203084 NA non-coding downstream 191816 4093178 ~ 4093411 (-)
G203189 NA non-coding upstream 121779 4408473 ~ 4408827 (-)
G203191 NA non-coding upstream 133465 4420159 ~ 4425359 (-)
G203204 NA non-coding upstream 215511 4502205 ~ 4502522 (-)
G203217 NA non-coding upstream 249647 4536341 ~ 4536570 (-)
G203219 NA non-coding upstream 258875 4545569 ~ 4546216 (-)
G202944 NA other downstream 298825 3985342 ~ 3986402 (-)
G202733 NA other downstream 1151575 3132313 ~ 3133652 (-)
CI01000047_01708628_01744282 BICC1B, BICC1 other downstream 2569710 1706068 ~ 1744282 (-)
G200472 NA other downstream 3450756 833941 ~ 834471 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other upstream 287641 4574335 ~ 4576342 (-)
G203286 NA other upstream 587685 4874379 ~ 4876734 (-)
G203840 NA other upstream 1631814 5918508 ~ 5927344 (-)
G203881 NA other upstream 1756559 6043253 ~ 6043789 (-)

Expression


Co-expression Network