XLOC_009473 (slc36a4)


Basic Information

Item Value
gene id XLOC_009473
gene name slc36a4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 41169211 ~ 41235027 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018607
TTTAGAGCTGATTCCTGGTGTGCAGACTCATCAGAGTACACGACACACACACCGTAAGATAATCATCTGTTGATAAAACATCCTCCAGATGAGCAGCAGAAGATCATGGCTTCAGCTGAGCAACTAGACATGGAGGTGATGACGCCGCTGATGGAGAAAGCAGAAggtgaagaagaggaggaggatgagAATGTAGATGGTGATGAAGATTCCAAGCATCTTCCTCAAGGCATCACGTTTACTCAAACTCTGCTGCATCTTTTAAAAGGGAACATCGGCACAGGATTGCTCGGGCTTCCTCTAGCAGTGAAGAATGCTGGCATAGTGTTGGGTCCGGTTAGTCTGGTTCTGATGGGTGTAGTGTGTGTCCACTGCATGCACATCCTGGTCAACTGCAGCCATCAGCTGAGTGAGCGgttgaAGCGTTCTCCCCTTGGTTACAGTGAAACAGTTGCTGCTGCTATGGAGTTGAGTTCCTCCCAGTGCCTGAGGAGAAGTGCTCATTTTGGAAGGCACTTGGTGAATTTCTTCCTGGTTTTGACCCAGCTGGGCTTCTGTAGTGTTTATTTCGTATTTCTGGCTGAAAACATTAAACAGGTTATGGAGGGCACTCATATGAACTCGACGGCAGAAACTGTGCTGTTATCCTCCAACAGCTCAGAAGCGAGTGTCGCCTCTTCTGTCGCAATAGATCTGCGCCTCTACATGGTCTTCCTCCTTCCCTTCATCATTGTGCTGACCTTCATCAGAGACCTGCGCAATATGGCCGCTCTGTCCGCCATCGCCAACCTCTGTATGGCCATCAGCCTCATCTTCATCTTCTCTTATATACTCAATGATTTGAGTGATCCCAGACGTCTGCCATACGCCTCCACATGGAGAAAGTTCCCCTTCTTCTTCGGCACAGCCATATTTGCCTTTGAGGGAATCGGAGTGGTTCTTCCATTAGAGAATCAAATGAGGGAGCCCAAGCGATTCCCTCAGGCCCTCAACATTGGCATGGGCTTCATCATCGTCCTTTATGTAACGCTGGCCACTCTGGGCTACCTGCGCTTCAGAGATGACATCAAAGGCAGCATCACGCTAAACCTTCCACACGACTCCTGgtccAATCAGCTGGTGAAGGTCTTGTACTCTTTCGGAGTGTTTGTGAGTTTTGCAGTGCAGTTTTTCGTGCCGGCAGAGATTCTGCTTCCGCCGATGTGTGAACGAGTCCGAAAGAGCTGGAGACGAGTGGCTGATCTTAGCCTTAGAGCACTGCTCGTCTGCCTCACCTGTGTAACAGCAGTGTTGATCCCGCGGTTGGACCTGGTGATCTCTCTGGTGGGTGCAGTGAGCAGCTCAGCATTAGCGCTGGTTTTCCCTCCTCTGGTGGAGCTGATAGCGTTTCCCAGTCAGCCTCCTCCACCAATGCTGCTCCTCAAAGACATCTCCATCGCCGCTCTCGGCTTCATCGGCTTCCTCACGGGAACTTACGTGACGGTGGAGGAGATCATTTATCCAGACGTCCAAGGACAGATCCGTCTCCATGATGACGGGAACTGGACCACACCCACTACCTCAACACCCTGAAGACCACGCCCACAAATGAAGGACCAATCAAATTCCATGTATAAACAGGATGCTGCCATTTTTGTAACACCATAACAACAGAAACTTCTTCCTATAGCTACGTTTTACAATCCCAGTAGTCACACTCCTCAGCTCTGCCCATTTCATTTAACGTCGGACCTGTATTCTAATTCAACAACAAGTGCCCTGTAAAGTGGACTCCGCAGGATGTTCAGCCATAATTTCAGGGAGCATGTAAATGTTTCTTTCGTATTGCATTTGAGCGTGTGAGATCGGAATTTATATTGGATTTATTTATGGAAATATAATAGCTCTTCTCGAGTATAGCGCTGCAGTGTGAATCTGTGAATGAGCATTCTGAAGTGAAATAAAGGTTGCTTAAGCGTTGGGAGAGTATAATGGAGAAAGGACTAGAGAACAGTGCACACTGCTTAGGGATCTCAAGCCAcgttcacactgcactttttgccccatagactgaatttttttttttttcgtctttaaaacttaattctcaaagcactttacacttAAAAATACAACGATAGCAGAAAATAAAGAGTAATGCAGaagataaaaattatatatataaaaattaggaCAAGTCAGAAACATTGTAACCATAAAACCGATCAAAAATCACGTCACAAATCatgtctaaaaaataaataaataaaattcttcaGGGATACTTAAAATTTCTTAAGatttttacattacattctttaaaAGACTTGGATTCATATTCATGCAAATGCTGTAGATCTGAAacacaagcttgtgcgacaagtttcgcttGTCACTGTATTCCcaacctgcgaaattgcatcacttgattGTATGAGACCAATAGAAGTTCAAAACGTGACCTTTCTGTACAGAAATGTTAtatatggagcaatcactcgctttatcaatgtctaatcatcttgttttatccaGCCTGTTTTTATAGTACCATACGATAGACTTTCAGCAAGCTCAAACTCTACAGTAATGTTATCAAAAGTTTTGATTTCGgtactgacattttttttaaacgcaAACATTTCAACAATGTTGAGCAAGTTCTTAGATGCCGCTAATTGGCTATTGTGTTTATATGCTCAACagaatgactgtgattggccgtgaaggtaaTCTGTTTACCACTCTTCATTGCTGGTCACCAAGTGCAAACATACATGGACACTGGAACAGCTTCGAAGGTAGTGTTGAGGCTTCGAATCGTTTCAAAACCCGACTACAatgacatctagtggtcattttttatgtattgacCTTAAACAACTTCAACCAACTTTAATATAATGATTTTGGTACTGAAATATTCAGTAATTTGACAACACTAAACCAGTGGTAGGCCAAGCGCCGCATTGTGAAACACTGAAAGTCAAAGCAAATGTGTTGAGGCTTTGAATTGTTTCAAAACCTGACTCTATAGTGaaattgtgttaatttttttgaAGTATTGCCCTTAAACAACTTTACTATATTGATTTCGGtactgaaatgttttttaaaaagtcaatttcCCCCAAACAATTAAGCACTGTTGAGCAAgttcttaaacaccactgattggaCATTGAGTttacctgctcaacagaaatgactgtgattggctttGAAGCTCATCGGTTCACAACTCCTCATCGCTGGTCAGAGTTTCAATATAGATAAACGGACACTTGAACGTTTCAAAGCCATGTAGGTACTTCTGACAACACTGTCCAGCACTACTCTAGAGTAGAGTAAGGCTTCATGAACCACTGAAACAATCAAAGCAAATGTGTCAAGGCTTCAAAATGTTTCAAAACCCAACTCGACAATGACATCTAGGGGTCTTTTTTTATTGCCCCTAAACAACTTCAATATATCGAGTTCggtacttttgacaacactaaacTAGTGGTAGGCAGAGCGACGCATCGTGAAACACATAAATAGTCGAAGAAAATGTGTCGAGGCTTCGAAACcgactctacagtgacacctagtggtattttaaaaagaatattgcTCAAACAATTTCAACAAAGAAACAGTTATGCGAATTAAGCAATTAAAGCCCCTGTTGTTTCAACAAGACACCAATAAATTTAGTGGAGTGGTTAGTGTTCTTAACTGGCGTGCAGACGTATTGGGTTCGAATCTAGATAAAGCAATCATGGTAAttaaaagtttgttattttattgctccgttcttgtgtgttttgttttaacatcagTCTGGATGAACTCAATCCGAATGAACTCTGCAAATAAAtatgtgttgttttggtcataaaaagtcTACATGAATACAAGACAATAAGTCACGATTTCTGAATGCTTGTACAACTGGGATTCAAACTCAGGTCACTCACAGCACAGGTGCATTATACACGCATACACAGTCCTCTTAACAactgtttcccaaccctgttcctggaggcacaccaacaagACATGTTTTGGATGTATctcttatctgacccattaacttcagcTTTTGGAGTCTCTTACATTcagatgagttgattcaggtgtgtttgattaggaagaggttggaAAATGTGTACTGCTGGTGTGCCTTCAgcaacagggttgggaaacactgcactAAGTTACAGGAGATGGTGGTTTTGCTTCAGACCCCATCACTGAAACACAGATTTGCCAGGTCAATCCTTTGAATCGCTTTaatcacatgacctgggtgttttgaaacATCTGAGCAGGGTTTGGAAGGCTCTGCGGCTTGGGATCTCTTCAGTCAGAACACACATGGATCTCTTCTAACATACTGGATATCCGAATTAGCTGTGTTAAATCAAGGAGACATGCACAATATGCAGATTGAAGTGGGGTGTGAGGACAGGGATTGAAAAACGATGTTCTATAGGAAGTGAGtgactgctgctctgggatggaGAACTTGTCTTTGCTGGCTTGAGGTGCTTTTTTATTGCTCAATTTGTTTTCCATTCCACATGCACATGCCCAAGGTGTGCTGCTGTAGCATGGACGTGTGTGTGCGGGAGTGAGTGATGGTGTGTATGAAGAATATTATTCTCCGCACAGCCGTATGGACTTCCCATGACTCCACCCCTGTTCCTCGATGGAATGGCTTTTACTCCATCGGGTCGCTGGACCGTATAGCATGACAAGCCGTCAGCATTAAACACTGCGGGAGAGCGCCAGAGAAATATTGCACACTGTAAAGAATGTACGTTCCCGCTGACTAGAGCTGTTATTAATAAACTAATCATTCCTCCTGAGGcttgtgatatttaatttttttttttgttccttctCCCTGACCGCGGCAGGATTCATTGGGAATAATGAGTATTTTAATTACTGACAAACATTGCACAAAACCAGTGCGAGCCTTTAAACTGTTAAGTAAGAATCCACTCGCTTTGATTTTAGCAAACGAGCATATTTGCATATATACAGATCTATTCTGGAGCCGTATCGACCGCATCAGTGGTGTACAGTGTGTGGAGGTGAATTCGCACAGACATCATTTTCATGTTGTTCCTCGGTTTGTGAAGACAAGCAAAAATCGTGTTTGCACTATTGCACACACAACAAAAGACATTGCAGAAGCTTTTTAGCTCTGAACTACATtagtgtgaaaatgtctttgtaaTTAATCCGATTAGTAGTGTTTTCTGATTGTTCCCAAGAATCCTGAAGGTGGATTTTCCGACTCCACTGTTTATCAGCATAATTATTGGTTTTCAAACCTACTTTGTTTTTCGTGGttcctttttacagtgtaatttttgaagggatagttcaggcaaaacttaaaatgcacccTATTTACtctgaaatctgaaaacctgcaagcatcgacttccatagtaggagaaacaaatactacgaaagtcaatggttacagcaaGTCAAAATGATGACTAAAAACGACTAAATACACTGGCAATTATTGACCTGGAAAGGAAGAGTCTTACTGCAGCTCTGATAGACTAACAGTGCCAAGGTTGTGGGTTTGACTCCTGATAAAAGACGAGTCGTCAATGCAGTGCAAGTGGCTttctttagggcctactcacactatgccatccctaccgtgcccaggcccatttcccggaacgtttgagaagtgtaagagcgctgaa
>TCONS_00018608
GCGGTGACGTTGAGCGCATAGTTTGTGTGTGAGATCCTgaaacgatgatgatgatgatgtgtgaaGCTCATCTTCGGTGATCCTCGAGAAATCTCCAGCGGAACTCAGCTTCATTCAACGGTTGAATGTTTCCCGGTGGGATGTCAACACGCTGGGCTTGATTATATGGTTTTTCGGGGCGGTTTTCAGAACCAGGACAAGGCCGGTGATGGTCGGGCTTCAAGCCGGAGAGAGAGACCGAGGAGAGGCTGAGATTTCTGCGCTCCTTCGTTTAGAGCTGATTCCTGGTGTGCAGACTCATCAGAGTACACGACACACACACCGTAAGATAATCATCTGTTGATAAAACATCCTCCAGATGAGCAGCAGAAGATCATGGCTTCAGCTGAGCAACTAGACATGGAGGTGATGACGCCGCTGATGGAGAAAGCAGAAggtgaagaagaggaggaggatgagAATGTAGATGGTGATGAAGATTCCAAGCATCTTCCTCAAGGCATCACGTTTACTCAAACTCTGCTGCATCTTTTAAAAGGGAACATCGGCACAGGATTGCTCGGGCTTCCTCTAGCAGTGAAGAATGCTGGCATAGTGTTGGGTCCGGTTAGTCTGGTTCTGATGGGTGTAGTGTGTGTCCACTGCATGCACATCCTGGTCAACTGCAGCCATCAGCTGAGTGAGCGgttgaAGCGTTCTCCCCTTGGTTACAGTGAAACAGTTGCTGCTGCTATGGAGTTGAGTTCCTCCCAGTGCCTGAGGAGAAGTGCTCATTTTGGAAGGCACTTGGTGAATTTCTTCCTGGTTTTGACCCAGCTGGGCTTCTGTAGTGTTTATTTCGTATTTCTGGCTGAAAACATTAAACAGGTTATGGAGGGCACTCATATGAACTCGACGGCAGAAACTGTGCTGTTATCCTCCAACAGCTCAGAAGCGAGTGTCGCCTCTTCTGTCGCAATAGATCTGCGCCTCTACATGGTCTTCCTCCTTCCCTTCATCATTGTGCTGACCTTCATCAGAGACCTGCGCAATATGGCCGCTCTGTCCGCCATCGCCAACCTCTGTATGGCCATCAGCCTCATCTTCATCTTCTCTTATATACTCAATGATTTGAGTGATCCCAGACGTCTGCCATACGCCTCCACATGGAGAAAGTTCCCCTTCTTCTTCGGCACAGCCATATTTGCCTTTGAGGGAATCGGAGTGGTTCTTCCATTAGAGAATCAAATGAGGGAGCCCAAGCGATTCCCTCAGGCCCTCAACATTGGCATGGGCTTCATCATCGTCCTTTATGTAACGCTGGCCACTCTGGGCTACCTGCGCTTCAGAGATGACATCAAAGGCAGCATCACGCTAAACCTTCCACACGACTCCTGgtccAATCAGCTGGTGAAGGTCTTGTACTCTTTCGGAGTGTTTGTGAGTTTTGCAGTGCAGTTTTTCGTGCCGGCAGAGATTCTGCTTCCGCCGATGTGTGAACGAGTCCGAAAGAGCTGGAGACGAGTGGCTGATCTTAGCCTTAGAGCACTGCTCGTCTGCCTCACCTGTGTAACAGCAGTGTTGATCCCGCGGTTGGACCTGGTGATCTCTCTGGTGGGTGCAGTGAGCAGCTCAGCATTAGCGCTGGTTTTCCCTCCTCTGGTGGAGCTGATAGCGTTTCCCAGTCAGCCTCCTCCACCAATGCTGCTCCTCAAAGACATCTCCATCGCCGCTCTCGGCTTCATCGGCTTCCTCACGGGAACTTACGTGACGGTGGAGGAGATCATTTATCCAGACGTCCAAGGACAGATCCGTCTCCATGATGACGGGAACTGGACCACACCCACTACCTCAACACCCTGAAGACCACGCCCACAAATGAAGGACCAATCAAATTCCATGTATAAACAGGATGCTGCCATTTTTGTAACACCATAACAACAGAAACTTCTTCCTATAGCTACGTTTTACAATCCCAGTAGTCACACTCCTCAGCTCTGCCCATTTCATTTAACGTCGGACCTGTATTCTAATTCAACAACAAGTGCCCTGTAAAGTGGACTCCGCAGGATGTTCAGCCATAATTTCAGGGAGCATGTAAATGTTTCTTTCGTATTGCATTTGAGCGTGTGAGATCGGAATTTATATTGGATTTATTTATGGAAATATAATAGCTCTTCTCGAGTATAGCGCTGCAGTGTGAATCTGTGAATGAGCATTCTGAAGTGAAATAAAGGTTGCTTAAGCGTTGGGAGAGTATAATGGAGAAAGGACTAGAGAACAGTGCACACTGCTTAGGGATCTCAAGCCAcgttcacactgcactttttgccccatagactgaatttttttttttttcgtctttaaaacttaattctcaaagcactttacacttAAAAATACAACGATAGCAGAAAATAAAGAGTAATGCAGaagataaaaattatatatataaaaattaggaCAAGTCAGAAACATTGTAACCATAAAACCGATCAAAAATCACGTCACAAATCatgtctaaaaaataaataaataaaattcttcaGGGATACTTAAAATTTCTTAAGatttttacattacattctttaaaAGACTTGGATTCATATTCATGCAAATGCTGTAGATCTGAAacacaagcttgtgcgacaag
>TCONS_00018609
AGCTGATTCCTGGTGTGCAGACTCATCAGAGTACACGACACACACACCGTAAGATAATCATCTGTTGATAAAACATCCTCCAGATGAGCAGCAGAAGATCATGGCTTCAGCTGAGCAACTAGACATGGAGGTGATGACGCCGCTGATGGAGAAAGCAGAAggtgaagaagaggaggaggatgagAATGTAGATGGTGATGAAGATTCCAAGCATCTTCCTCAAGGCATCACGTTTACTCAAACTCTGCTGCATCTTTTAAAAGGGAACATCGGCACAGGATTGCTCGGGCTTCCTCTAGCAGTGAAGAATGCTGGCATAGTGTTGGGTCCGGTTAGTCTGGTTCTGATGGGTGTAGTGTGTGTCCACTGCATGCACATCCTGGTCAACTGCAGCCATCAGCTGAGTGAGCGgttgaAGCGTTCTCCCCTTGGTTACAGTGAAACAGTTGCTGCTGCTATGGAGTTGAGTTCCTCCCAGTGCCTGAGGAGAAGTGCTCATTTTGGAAGGCACTTGGTGAATTTCTTCCTGGTTTTGACCCAGCTGGGCTTCTGTAGTGTTTATTTCGTATTTCTGGCTGAAAACATTAAACAGGTTATGGAGGGCACTCATATGAACTCGACGGCAGAAACTGTGCTGTTATCCTCCAACAGCTCAGAAGCGAGTGTCGCCTCTTCTGTCGCAATAGATCTGCGCCTCTACATGGTCTTCCTCCTTCCCTTCATCATTGTGCTGACCTTCATCAGAGACCTGCGCAATATGGCCGCTCTGTCCGCCATCGCCAACCTCTGTATGGCCATCAGCCTCATCTTCATCTTCTCTTATATACTCAATGATTTGAGTGATCCCAGACGTCTGCCATACGCCTCCACATGGAGAAAGTTCCCCTTCTTCTTCGGCACAGCCATATTTGCCTTTGAGGGAATCGGAGTGGTTCTTCCATTAGAGAATCAAATGAGGGAGCCCAAGCGATTCCCTCAGGCCCTCAACATTGGCATGGGCTTCATCATCGTCCTTTATGTAACGCTGGCCACTCTGGGCTACCTGCGCTTCAGAGATGACATCAAAGGCAGCATCACGCTAAACCTTCCACACGACTCCTGgtccAATCAGCTGGTGAAGGTCTTGTACTCTTTCGGAGTGTTTGTGAGTTTTGCAGTGCAGTTTTTCGTGCCGGCAGAGATTCTGCTTCCGCCGATGTGTGAACGAGTCCGAAAGAGCTGGAGACGAGTGGCTGATCTTAGCCTTAGAGCACTGCTCGTCTGCCTCACCTcacagagaaagagagaagatGCAGCTTAGAGAGCAGGTGTGTGACACTTCACACTTCAGTCTCATGAATTAAACATATGTGTACGGCTGAAACTGTGTGTGTGGCTTTTATAAAAGAGTCTCTCCActaaaagctctgtgtgtgtgtggaaatatATTGTGCCTTTGTTTTCAGGGATAGAACAGGGGTTTCGTCTTTCAAGTCAGCAAAAAAGATGAATATTGATTTTTGATTTCAGCCACAATCCTCTGCATACACTCGACCACTAACCACAACATTAGTGCAGATCACAGAGAGTTAAAGACCACAAACATTGCCATTTGAAACCACAGTTCCATTAATTAGGGTTTTTATAAGATTTgctaaactacaaaaaaaaaacagcattgcgATGGATTTATGTTGCATATTTGACACACAAATGGGAAAATGACTGTATTTCTCATTAGAATTAGTTGTGTCTGTAAATAAAACTTCGGTAACTTTACCTGAAGGCTATGAAGCCCTATTAACACGTGACATCAACGCTTGAaggagggcgtgtctgaagttggggttgACGTGAttgtcatagaagcgtcagccaataaaaAAGTCCACAATCAGcgactgtctgagctggtgtatttgcattaAGCGATCTAAGTGGCTGACGCTCCAGTTGGCGTTTggaaaagttgagaaatttctaacttctgc

Function

symbol description
slc36a4 Predicted to enable L-alanine transmembrane transporter activity and L-proline transmembrane transporter activity. Predicted to be involved in L-alanine transport and amino acid transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC36A4 (solute carrier family 36 member 4).

GO:

id name namespace
GO:0015808 L-alanine transport biological_process
GO:0003333 amino acid transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function
GO:0015180 L-alanine transmembrane transporter activity molecular_function
GO:0015193 L-proline transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050309-239 Predicted to enable L-alanine transmembrane transporter activity and L-proline transmembrane transporter activity. Predicted to be involved in L-alanine transport and amino acid transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC36A4 (solute carrier family 36 member 4).

Ensembl:

ensembl_id ENSDARG00000039661

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018607 False 5705 mRNA 0.42 11 41169211 41234144
TCONS_00018608 False 2632 mRNA 0.46 12 41172554 41235027
TCONS_00018609 True 1970 mRNA 0.46 11 41178643 41234139

Neighbor

gene id symbol gene type direction distance location
XLOC_009472 NA coding downstream 97014 41068774 ~ 41072197 (-)
XLOC_009471 BX571794.3 coding downstream 808458 40356379 ~ 40360753 (-)
XLOC_009470 kcnj13 coding downstream 901726 40217256 ~ 40267485 (-)
XLOC_009469 si:ch211-281l24.3 coding downstream 993317 40137564 ~ 40175894 (-)
XLOC_009468 CR388129.1 coding downstream 1039670 40125409 ~ 40129541 (-)
XLOC_009474 NA coding upstream 3218 41238245 ~ 41246009 (-)
XLOC_009475 usp16 coding upstream 14745 41249772 ~ 41311295 (-)
XLOC_009476 nlrc8 coding upstream 77005 41312032 ~ 41523292 (-)
XLOC_009477 si:dkey-121n8.7 coding upstream 114241 41349268 ~ 41390410 (-)
XLOC_009478 CR854897.2 coding upstream 158374 41393401 ~ 41396073 (-)
XLOC_009467 CR759918.2 non-coding downstream 1100084 40069011 ~ 40069127 (-)
XLOC_009464 NA non-coding downstream 1162673 40002864 ~ 40006538 (-)
XLOC_009482 CR925731.1 non-coding upstream 294233 41529260 ~ 41543440 (-)
XLOC_009483 NA non-coding upstream 405414 41640441 ~ 41667355 (-)
XLOC_009494 NA non-coding upstream 818812 42053839 ~ 42058846 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000095_06364435_06391469 NA coding CI01000095 null 6364018 ~ 6391469 (-)