XLOC_009470 (kcnj13)


Basic Information

Item Value
gene id XLOC_009470
gene name kcnj13
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 40217256 ~ 40267485 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018599
ttttgttttgatcacgcctaaCGTGACAATTACTTGACAATTCTCAGTTCCTCGGGATTTATTATTCACaattatgtgtttgagtaaagtGTAATTTTGGTTTAGTTCTGAAAACCACTGAAgacatttcatattttaaacaaaaacataatttagagcatttgtaattaattaattaataaaagagTACCTAATTAAATCACAACATCAGTATTAAACTTTCACTTAAAGGAAATCAATATTAATATCTATTCATTTTTGGTGGAACAACAGTAATTTTCGGTCaccaaaaaacatttgttattcaaTTCAATTGCCATATTTTCCAGGCAAAAaggcattaatttattttttttttaagtctaaaaGAAATGTCCTCATGAATAACTAAtagaataaacaaacatttagcTAAACCCATTGCCTAAAAAATCTAGAGAAGTGCAGAAAAATAAGCACACACAAAGTATCAACAGCTGATTAAAACCATTTCTCTTATTAAACCTTATTGTGCCGCATTGCTTAGCACTCCCTGCAGTCACTGTGCATTCACTTGCATAAGAAGAAAAGAAGCtttctatttagtttcatttcagcCCACGGACAGATCAATAATGATGACATCATCAGTAAAAGCCTGCAGGCTGACACTTTTCCACCAATCGATCGGTCAGGCTCAGAGATGCCTGCCAAATCGCATGGGAAAGCTCTGCTGCCACAGCAACGGCTCCAACAGGAAGCATGACAACCAGCAAACCATACGACGCCCACATAGAATTCCATCACGTTGTTCATCTGTGCACATACAGTTTGTTATTACTATACTGTATAGCAAGGATTTCACATTAATGCAAAATGCAAACTAATATCGAGGACCTTTAAGGACAAGCACAAGATCAAGCTTTTCTTAAATACGTTTTTCACATTTGCCACATTAGTTCTGTCCTCGATATCTGATGAAACCCACTGCCAccgttttttttcttcagtgtgaAGCAGTGTTAAAAAAGTGCTGCTGGCATATCAGTGTAAAAAAATGCAGTACATACCTGCACATTTTAATCACTGTGAAACCAATCATTCATATAAAACAGATCCCACTGATTTAAAACACAAAGTACTGGCACAATTGTGACACTACATGTTAGATCACCATTAGTAAAAGTAGTCGGATACAAAATTCTGCCTTCAGCATATGTCTATAAATAGCTGAGAATGAGACAGGGGGCGTTCAATAATTCAATTATTCTACCACATTAAAAATGGGAGAGAGGGAGTGAGACAGAAGGTCAcgtctaaaaaaaatatatgccaCTCTGCTCCTCAGTCCATACCAGACGCACTAAAAAGACACAAAGATCGCTCACAGTTGTGCAATTCAGCGTCCTTTTAATAAGTATCTGGGTTGAAAAGGCAATTAAAAGATAATTTAACAATAAGATgagtaaacaaaatgaaaaataaacaattttagaaAATGTGCACACTCAAAATCTACGAAAATATAAAGTCAGAAGTATCTGCACAATACTGTTTGTCATTTGCTGAGTGTTGAAGTGTGAATATGGCTTGGCGTTTAAAATTTAAAGTTTGACATATTAAACTTCTAAATTTGGGTGAGCAGAAGTCTTtttccaatgtgtgtgtgtgtttgtgtgtgttttaacacaGTGATGTGGGAGTACAGCTGGATCTTGGTGTTTGCTAATCCAACAGTGGCGCTCAAATAGAAGCCAGACATTTCCCAGTCGAATCCTCCTTCCCCCTTCTCGAATTTACTTACCCTTTCACCTCACAAGTGAGTCAATTCATCATCAGAAAAAGTGTCAGTGGTCACTAAGGAGGCGGCGTTCCCATTTCGGTCCAATTGGGAATATCCTAACGTCTGGATTCCTATTAAAAGAACCTACTTTAGAGACCAGGCTCCTGCTTTGGCGGACAAAGTCCATCCAACCCAAACGATGCCAGAGACTCTTAATCATCAACACTTCTCAAAGATGTTGAGGCCCTGCTTCGCCTCAGGACAATTGAGACACTGCGCTGCAATCAAAGGCAGCAGACGCTTATTGATGCTGGAGGAGGAAGCATGCGGTAGCCTTTGGAAGATCGACTCTTTCCTGAAAGACAGCAGAAGTTTTAAACGACTCAAAGgagtTTCTTCAGTGCATCTGACTCTGGTGTCTCCTACTGAAGGATCTAGCTTGGTTTTACACTGTGACCGAGGATCTGCGGTTCCTCAAGATCTAGATCCTTCTTCAACATCCTAGAAGCTTTCACACTTCATTTGAGAACACTGAGGAATCACCTTTAAAAAGCCCAAAGAAAGAAATCGGATACCATCCACATGCCTACCACCATGACAAACACCACCGCTGACCAAAAGGCCTCCTGCCCTTTGATGGTCAAACCTCAGCGTCGCCGCCTGGTCAGCAAAGACGGCCGGAGCCAGACAAGAGGAAACACAAGAGGAGGCTCCAGAGAGACGTGTTTCAGTGCTCTGCGGGACTTGTGGGGCACATGGCTGGCGCTACGGTGGCGGTGGGTGGTTTTGGCTTTTTGTGGCTCATTCCTGCTTCACTGGCTGCTGTTTGCTGTATTATGGTACCTGCTGGCTCGGGTCAATGGAGACCTGGATGTCCTGGATCATGATTCTCCTCCTCCCGGTCATGTGCTGTGTGTTAAACATGTGAATGGGTTCACAGCCGCCTTCTCGTTCGCCCTGGAGACGCAACTCACTATTGGGTATGGCACAATGTACCCAAACGCAGACTGCCCCACTGCCATCGCGCTGCTTGCCCTGCAGATGCTTCTGGGACTCATGCTGGAGGCCTTCATCACTGGTGCATTTGTAGCCAAGTTCTCTCGGCCTCAGAAGCGATGTGACGGGATCCTATTCAGCCCTCAGGCTGTGGTGTGTGAGCAGAAAGGCCAGCGCTGTCTAATGTTTCGAGTGTGTAACCTCCAGCCACAGCCGCTAGTGGACGTATCCGTGAGTGCTGTCCTCTACGAGGAGCGAGACGATCACGAACTCCACCAAACTGCTCTGGAGTTCAGCATCGACAACCTGGGCTCCAGATCTTGCCCTCTTTTCCTCTCCCCTCTGACCTTCTTTCACCCTTTAAATCCATCCACTCCTTTCATCAACAACCCAAGCAGTCAAACACACTTTGAGCTTGTAGTGTTTCTCACTGCGACTCAGGAAAGCACAGGGTCTGGTTACCACAAGAGGACGTCTTACCTGCCTGACGAGATCCAATATGGCTACTGCTTCTCCAAGGTGACGTCTGTACACCAGAACAAAACCCCAAACATGCGCTATTTTGACACGGTGCCCTGTCCCCTCACACTAGCCAACACACACACCACTGATACACCGGATAAAGAGCATGTGGTGGTTCAGCTGAATGGAGAAGGCAGCGACCGCGTGGAGTAGAAGAAGTGCTGTGTATTAATGCAAGGGTGTATGAATTCTCCATTCATAAAAAGGGCATTTCATTTCACAACACGACCTCCAGTGAATGACTTATTTATCCCAGAAGACAAGCTTAGCTAGCTATCATCTGACATGTCCGTTTGCCCTGTTAGGTACACTTCAAAATGCTGCTATGAATGCATTGATTCATGCGTTCATCTTGTAGTACTGCTGAACACGCACCATGACAGATGTTCAAGATTGTCTTCATCTGCGATAAGTGGAATGTACAATGTTTTATTGTATGAATCTTCACCCTGATTCCACTCACAACTCAAGACCCCAGACCAAACATCATGTTTGAGCCCTTACTTACTGCGTTAACTAAATTATTGAAGCGCTTTATGGAGAGATTACCTCTTCATCCATAAAGACATTTTTatcaaaatgaattaatattacttttaacgggattagttactttaaaaagtgggtaaacccattgtaacttagAAGTATGTTGacgtaaattaatttttaaaattatccacagttcatttacttaattttaaggcaACGTTCTTATTTTCTTAAGCAAGTCAaggagtttactcactttttaaagtcaactaatcgctttttacagtgtagaaatgaAGCGTAAACTTactttaatgatgttttttttttttctatactaCAAGTGTATGGTCATTATTAAAGACCACATACACACTAATGATAAATTTATTTGTTGGTTCACGTTTTAGTACCTAATCCTGTCCTGTTCACATTGTTTAGCAGTTTACAGGAGTGACGACCACATCCAACAACCAGAAAAATGCTAAATGCAGATACTGTTAACGTTCACTGAGGCTAcactttgtactttttaggtgctTATATGGACTCTTTAGGTTTAAACGTGAACAATTCGAAAAGTTACAATCCTAGTAACAactttgtacctttattttaaCAAGAGTGTTTGCAGAGCTAGATATCACAGGGAAAGTGATTCACGCCTTGACCAATTTGTGTTGCCAGATCTTGATAGAAAAAGCATTATAAActgcaaataaatgtatatactttttatttaaaatattacacattACTCCCATCTGCCCACCTTATTTTCTACAGTAATGGATACTTCCggatatatacagtcaagcctgaaattatccctacccctggcaaattctgacttaaagttttttttttcattcatttattttctttaggcttagtcccttatatatcagggttcatcatagtggaatgaactgatAACTATTCCAGAAtgtgttttacgcaacggatggcCTTCCAACTGCAAACCATTacaaggaaacacccatacaccaccacattcacacacactacggccaatttagttcatccaattcacctatagtgcatgtctttagactgtggggcaaccagagcacccagaggaaacccacgccaacattgtagaacatgtaaactctacacagaaatattTCCTGGTCCAACCTGGACTCAAACTAGCaaattcttgctgtaaggtgacagtgctaaccactgagccacaatgtcACCCCTAGTTTTcgttcaaatgtaaataataacttTCTTCTACATCTTCTTATTATCTTTgagagaagcctgtgtcatttccaataaaaaaatatatataattctggTTGAATagaagtaactttaagtcagaatttgccatggTTAAGAATAATTTCAGCTTGACTGATTTATTTCAATGAtgttttagagcaggggtgtccaaacttggtcctggagagcttgtgtcctgcatagttcagctccaacttacttcaacacacctcccaAGAAAAAGCTTAATTAGCTGCTTCAAGTGTGTTTAACCGGTGTTGGAATtcaaatatgcaggacaccggcacacAGGACCGAGTTTTGACACCACTGTTTTAGAGATTTACCCACCAGTAATTGATtaaatttgctttcatttttatgttttatgatgtTTTAAAGCCAAGTCTAAATGTGTATCGACCTGGTTGACCCTTTGTGGATAGGTTATCATTAATAGACAAAAAGTTGgtggcacggtagctcagtggttagcacatttgcctcacagtaagaagatcgctggttcgagtcctggctagaccagttggcatttctgtgtggagtttgcatgttctccccgtgttggcatgggtttcctttgggtgctacggtttccccatagtcctaagacatgcgctataggtgaattgaataaactaaattggctgcagtgtatgtgtgtgaatgtgagagtgtttcccagtactgggttgcagctggaaggacatccactgtgtaaaacatatgccagaatagttggtggttcatttcgctgagACGACCTCTTAtacataagggactaagccaaaagaaaattaatgaatactaAACAAAAAGCTCAAAATTCACTCTTAGTGATGTCAGGAACAAAATTTAACCAGAAGAAATTGGTCAAAATTCTTTATATAGTGAAAGTTAAATGGTTAAACTATGTGGgcataaacaaaaaacatgaacaaaacacaacactgacATCTGCTGTTTATCTTAAACTACAGAACACTGTACGAGTTTGGAGAATTTGTTATATTAAATTGGTCAAGAAAAGCTGATACACATGAGATGGCTGAAACACTATGGTAAGAGAGTGTCAGTCATGCTATTTCAGGAGAAGAGTGAGTTTTGTACATGGACTGAATGATAACTTTACTGtgttaaataacttttaaatgtcGTTGTCACTCCTGAAACTTTACAGTGTGTATGTGGACAGAGAGCATTTCAATGAtggtgtatttttgtttgtttccccCTTGATCAAAACCAATCAGATTTAGGATTAATGAAGAAAATAAGCTTAATGAACTACAAAAACTGCATCACCAACTTTAAATTGTCAAGTACCCAGACCttaatgtcatcatttactcaccctcatgttttcTCAAACTCTTAAGAAAACTGCTCATCTTTTGAGAAAAGATTACAGcactagttcacccaaacataaaCATTCTGTTATTAATGACTCACCATTGTCTTCTTTCAATCCTCTGAGACGTTCGATCATCTTCGAAACACAAATGAAGTTATTTAATGTGAAATCTGGACGCTCTCTCATCCACTAATCCAAGGGTGTCAAAATCAGTTCTTGGGCAGTTTTGTTCCCAACACACTTACCAGTAAGTTTTAAACCAGCCTGAAGGGCTTAGTTTgaccaggtgtgtttgattagagttggattTAAACTGcaaagctgtggccctccagtgacacctgtgctctaatctgtatgattacagtttgaaccactgaagacatgagggctgtgtctgaaatcaccTATAtcactcagtaggtactgcatttgaatttaaatgtgc
>TCONS_00018600
TTCTCAAAGATGTTGAGGCCCTGCTTCGCCTCAGGACAATTGAGACACTGCGCTGCAATCAAAGGCAGCAGACGCTTATTGATGCTGGAGGAGGAAGCATGCGGTAGTACGTGAACTTTTGAACAACATAATTCATGcaatgattttgttttattacatataCTGTAAAGATCTTTTTCTCTCCCTTAGGCCTTTGGAAGATCGACTCTTTCCTGAAAGACAGCAGAAGTTTTAAACGACTCAAAGgagtTTCTTCAGTGCATCTGACTCTGGTGTCTCCTACTGAAGGATCTAGCTTGGTTTTACACTGTGACCGAGGATCTGCGGTTCCTCAAGATCTAGATCCTTCTTCAACATCCTAGAAGCTTTCACACTTCATTTGAGAACACTGAGGAATCACCTTTAAAAAGCCCAAAGAAAGAAATCGGATACCATCCACATGCCTACCACCATGACAAACACCACCGCTGACCAAAAGGCCTCCTGCCCTTTGATGGTCAAACCTCAGCGTCGCCGCCTGGTCAGCAAAGACGGCCGGAGCCAGACAAGAGGAAACACAAGAGGAGGCTCCAGAGAGACGTGTTTCAGTGCTCTGCGGGACTTGTGGGGCACATGGCTGGCGCTACGGTGGCGGTGGGTGGTTTTGGCTTTTTGTGGCTCATTCCTGCTTCACTGGCTGCTGTTTGCTGTATTATGGTACCTGCTGGCTCGGGTCAATGGAGACCTGGATGTCCTGGATCATGATTCTCCTCCTCCCGGTCATGTGCTGTGTGTTAAACATGTGAATGGGTTCACAGCCGCCTTCTCGTTCGCCCTGGAGACGCAACTCACTATTGGGTATGGCACAATGTACCCAAACGCAGACTGCCCCACTGCCATCGCGCTGCTTGCCCTGCAGATGCTTCTGGGACTCATGCTGGAGGCCTTCATCACTGGTGCATTTGTAGCCAAGTTCTCTCGGCCTCAGAAGCGATGTGACGGGATCCTATTCAGCCCTCAGGCTGTGGTGTGTGAGCAGAAAGGCCAGCGCTGTCTAATGTTTCGAGTGTGTAACCTCCAGCCACAGCCGCTAGTGGACGTATCCGTGAGTGCTGTCCTCTACGAGGAGCGAGACGATCACGAACTCCACCAAACTGCTCTGGAGTTCAGCATCGACAACCTGGGCTCCAGATCTTGCCCTCTTTTCCTCTCCCCTCTGACCTTCTTTCACCCTTTAAATCCATCCACTCCTTTCATCAACAACCCAAGCAGTCAAACACACTTTGAGCTTGTAGTGTTTCTCACTGCGACTCAGGAAAGCACAGGGTCTGGTTACCACAAGAGGACGTCTTACCTGCCTGACGAGATCCAATATGGCTACTGCTTCTCCAAGGTGACGTCTGTACACCAGAACAAAACCCCAAACATGCGCTATTTTGACACGGTGCCCTGTCCCCTCACACTAGCCAACACACACACCACTGATACACCGGATAAAGAGCATGTGGTGGTTCAGCTGAATGGAGAAGGCAGCGACCGCGTGGAGTAG
>TCONS_00019231
TAtatattcaacaacaacaacacatttttttgagtgtattctAACCTCAGATAATCAGCTCTGCATTACAGCTGATCCCATTCACCCAATGCACAGCTTCTTCAGTCTGCTACTGTCAGGGAGCCTCCAGGCCCGGACCAACAGACTGAAGGACAGCTTTATTCATCAGGCTGTCAGGAAGCTCAACTCTCTCCCGGCTCTCCCACCACTCCCTTCTCCCTCCCCACGCACCTTTgaactctgacacagatGTGAGTCAATTCATCATCAGAAAAAGTGTCAGTGGTCACTAAGGAGGCGGCGTTCCCATTTCGGTCCAATTGGGAATATCCTAACGTCTGGATTCCTATTAAAAGAACCTACTTTAGAGACCAGGCTCCTGCTTTGGCGGACAAAGTCCATCCAACCCAAACGATGCCAGAGACTCTTAATCATCAACACAGCTTCTGTGAAACATTTGTTGTGTGGAGGTAATAAGTGACAGTG

Function

symbol description
kcnj13 Predicted to enable inward rectifier potassium channel activity. Acts upstream of or within establishment of pigment granule localization; melanocyte differentiation; and melanocyte migration. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in brain; caudal fin; eye; gonad; and integument. Used to study Leber congenital amaurosis. Human ortholog(s) of this gene implicated in Leber congenital amaurosis 16 and snowflake vitreoretinal degeneration. Orthologous to human KCNJ13 (potassium inwardly rectifying channel subfamily J member 13).

GO:

id name namespace
GO:0097324 melanocyte migration biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051876 pigment granule dispersal biological_process
GO:0051877 pigment granule aggregation in cell center biological_process
GO:0043473 pigmentation biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0030318 melanocyte differentiation biological_process
GO:1990573 potassium ion import across plasma membrane biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005242 inward rectifier potassium channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function

KEGG:

id description
ko04974 Protein digestion and absorption
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-070129-1 Predicted to enable inward rectifier potassium channel activity. Acts upstream of or within establishment of pigment granule localization; melanocyte differentiation; and melanocyte migration. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in brain; caudal fin; eye; gonad; and integument. Used to study Leber congenital amaurosis. Human ortholog(s) of this gene implicated in Leber congenital amaurosis 16 and snowflake vitreoretinal degeneration. Orthologous to human KCNJ13 (potassium inwardly rectifying channel subfamily J member 13).

Ensembl:

ensembl_id ENSDARG00000043443

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018599 False 6855 mRNA 0.40 7 40217256 40267485
TCONS_00018600 False 1528 mRNA 0.51 4 40220678 40246396
TCONS_00019231 True 486 lncRNA 0.47 3 40248829 40260796

Neighbor

gene id symbol gene type direction distance location
XLOC_009469 si:ch211-281l24.3 coding downstream 41362 40137564 ~ 40175894 (-)
XLOC_009468 CR388129.1 coding downstream 87715 40125409 ~ 40129541 (-)
XLOC_009467 CR759918.2 coding downstream 148129 40069011 ~ 40069127 (-)
XLOC_009466 gpr55a coding downstream 151960 40051218 ~ 40065296 (-)
XLOC_009465 lpar5b coding downstream 175801 40040155 ~ 40041455 (-)
XLOC_009471 BX571794.3 coding upstream 88894 40356379 ~ 40360753 (-)
XLOC_009472 NA coding upstream 801289 41068774 ~ 41072197 (-)
XLOC_009473 slc36a4 coding upstream 901726 41169211 ~ 41235027 (-)
XLOC_009474 NA coding upstream 970760 41238245 ~ 41246009 (-)
XLOC_009475 usp16 coding upstream 982287 41249772 ~ 41311295 (-)
XLOC_009464 NA non-coding downstream 210718 40002864 ~ 40006538 (-)
XLOC_009460 NA non-coding downstream 368434 39847491 ~ 39848822 (-)
XLOC_009458 NA non-coding downstream 1264827 38948423 ~ 38952429 (-)
XLOC_009478 CR854897.2 non-coding upstream 1125916 41393401 ~ 41396073 (-)
XLOC_009482 CR925731.1 non-coding upstream 1261775 41529260 ~ 41543440 (-)

Expression


Co-expression Network