XLOC_009465 (lpar5b)


Basic Information

Item Value
gene id XLOC_009465
gene name lpar5b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 40040155 ~ 40041455 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018587
CGGAACACCTTTAACCCAGAAGACGTTTGTACACGGATTTCTCATTTAGTACGTCGATTCGTTTTCTTGAGAGAAATGAATCAAAACTTCACCAACACATGCATTACTAACCAACTGGAACCTTCGGCCCGCTTTGTGGCGTCGGCTGTCGTGTATGGACTGGTTCTGGTCATCGGTTTGCCGCTCAACACGGTGTCCCTGTGGATCCTCCTGCGGAGTCATGGGCTCCGGTCCCCGTGCGCGGTGCTGATGGTCAACCTCGCCGCGTCCGACCTGCTTCTCGCGCTCTCCCTGCCGCTGCGCGTCTACTTTTACGCAACTCTCCAGTGGCCGTTAGGCGCGGTCTCGTGCGCCGGTGCCATCATGCTGTTCCGCATCAACATCAGGACGAGCTCCATCTTCATCACTTTAATCAGCCTGGACCGCATGGTCGCGCTGGTCTTCCCGCTGCGCTCCAGGTCTCTGCGCACCTCCGCGTGCGCCCTGAAGTCTTGCGCGCTCGTCTGGATCCTCATCACCATACTTTCCATCCCTGAGACTTTAAAAATTCACGGCTCCCTGAAAAACTGTGCCCATATGCCGTGTTTTGAGTTTCAGGTGCAGCAAAATGCCTCACAAACTCCTTCGATTTTACAAGCGCTGTTTTTATTAATACTCCTGGTGGTCAATGTCGTCTCCACGGTCGTGGTCGTGGTCGTGCTCCAGAGGCGACCAAACGCCGGCGCGACCAAAGTCAACAACAAAATGAACGTTGTGCTTATTTTTCTAGTAAACATGCTggtgtttactgtatttttcttGCCGTTTACTTTACAACTCTTGGCGTACAAGAAGGATGATTTTGACAGGAAAGTTTTACGGTCGCTGATCTGCCTGGCGAGTGTCAACTGCTGCCTGGATCCGCTCATCTACTATTTCTCCCTGGACTCATTCTGGCAGGACAAGGGCAAAAAACAAACTGACGCTGGAACTTATTCCCTCAGCAGGTCCATGGATAGGTCTTGACCAGCTGGAAATACTGAGTATAAACAAACCAATATAGTTTCTACGGAGCTCCTAAGGGACAGGCTATACCTCTGAGGGGGATgaaaatgtttcttaaacatTCCAGAAGGAAAATTCCGTTCACTCTCGTATAGTCATAaacatatattgtttatatagtTTTCCTTTGACTTGCACCATGGTTTTACGAGAGAACGGTTATAGTACGAGTAGCCCCCGGTTTCTCGGTATAACGCTTAATGTATTCATTTGGTTTTAGCACAGATGTTTCTTGATGCATTAGCGTTTGGatgtga

Function

symbol description
lpar5b Predicted to enable lysophosphatidic acid receptor activity. Predicted to be involved in positive regulation of Rho protein signal transduction and positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G protein-coupled signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human LPAR5 (lysophosphatidic acid receptor 5).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0035025 positive regulation of Rho protein signal transduction biological_process
GO:0051482 positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G protein-coupled signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0070915 lysophosphatidic acid receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081022-116 Predicted to enable lysophosphatidic acid receptor activity. Predicted to be involved in positive regulation of Rho protein signal transduction and positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G protein-coupled signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human LPAR5 (lysophosphatidic acid receptor 5).

Ensembl:

ensembl_id ENSDARG00000068638

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018587 True 1301 mRNA 0.49 1 40040155 40041455

Neighbor

gene id symbol gene type direction distance location
XLOC_009464 NA coding downstream 33617 40002864 ~ 40006538 (-)
XLOC_009463 rps5 coding downstream 68399 39964943 ~ 39971756 (-)
XLOC_009462 lypc coding downstream 77146 39957809 ~ 39963009 (-)
XLOC_009461 msh5 coding downstream 84370 39934295 ~ 39955785 (-)
XLOC_009460 NA coding downstream 191333 39847491 ~ 39848822 (-)
XLOC_009466 gpr55a coding upstream 9763 40051218 ~ 40065296 (-)
XLOC_009467 CR759918.2 coding upstream 27556 40069011 ~ 40069127 (-)
XLOC_009468 CR388129.1 coding upstream 83954 40125409 ~ 40129541 (-)
XLOC_009469 si:ch211-281l24.3 coding upstream 96109 40137564 ~ 40175894 (-)
XLOC_009470 kcnj13 coding upstream 175801 40217256 ~ 40267485 (-)
XLOC_009458 NA non-coding downstream 1087726 38948423 ~ 38952429 (-)
XLOC_009457 NA non-coding downstream 1129884 38901933 ~ 38910271 (-)
XLOC_009456 NA non-coding downstream 1489351 38547827 ~ 38550804 (-)
XLOC_009471 BX571794.3 non-coding upstream 314924 40356379 ~ 40360753 (-)
XLOC_009472 NA non-coding upstream 1027319 41068774 ~ 41072197 (-)
XLOC_009474 NA non-coding upstream 1196790 41238245 ~ 41246009 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000095_04313039_04313971 NA coding CI01000095 null 4312950 ~ 4314194 (+)