XLOC_009457


Basic Information

Item Value
gene id XLOC_009457
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 38901933 ~ 38910271 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018842
cgAGAGAGTTTGCACCATCAGCACTCGGCACCagcactttttttcttctttgagaAAATAACAGATTGTTCGCTTCAACAGAGAGCTGAATCAATTTCCTCTGTCCTCAGTTAAGGGCGGAGCTGAATTTGAgcttgcacacgcacacacacacacacacacacacacacacacacacacatttgatggATTACAGGCCTTGGTGGGGGTCCCAGGAGGCTTTGCTTCAGGGGTTGTGGGTAGACAGCAGTGGTGAATTCGTAGGATAAGGGGTATCTCCTTTGCGTAGCAAGCCGGACGCTAAGGAATTACGATGGAGGGGACACTAGGGGTACGAACGATCTTTCGGGGTCATCGCATCCAATCCCAGGCAATGAAAGAATACAGCAATCTCATGGGAATCGACCCCATGGAgagatgtttttgttttacctaatGGGGAACTGCGGAGGAACCGCTAATAGGCTAGAGATCCGTTCTTCCTCCACCTCCGTCTTATCAGAAAGCACCATTCCCTGCGGGGCCGCGCGGACGCATCCTGACATCCGTCTGCTTTCAACTTAATCACCGGCCCGGAGAACCCGCCGAATCTGGATCCCGGGATAACACAAAGTGAACGCGAACGAGGGTCAGACGCACACTGACATTTACCatcaggaggatgaagatgactggatgtg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018842 True 680 lncRNA 0.51 2 38901933 38910271

Neighbor

gene id symbol gene type direction distance location
XLOC_009456 NA coding downstream 351129 38547827 ~ 38550804 (-)
XLOC_009455 NA coding downstream 476088 38425548 ~ 38425845 (-)
XLOC_009454 trpc2a coding downstream 540146 38339386 ~ 38361787 (-)
XLOC_009453 NA coding downstream 604199 38296157 ~ 38297734 (-)
XLOC_009452 rhoga coding downstream 683613 38201964 ~ 38218320 (-)
XLOC_009458 NA coding upstream 38152 38948423 ~ 38952429 (-)
XLOC_009459 robo1 coding upstream 366828 39277099 ~ 39820491 (-)
XLOC_009460 NA coding upstream 937220 39847491 ~ 39848822 (-)
XLOC_009461 msh5 coding upstream 1024024 39934295 ~ 39955785 (-)
XLOC_009462 lypc coding upstream 1047538 39957809 ~ 39963009 (-)
XLOC_009444 CR944667.3 non-coding downstream 1021046 37876716 ~ 37880887 (-)
XLOC_009432 CR848836.1 non-coding downstream 1172767 37727834 ~ 37729166 (-)
XLOC_009464 NA non-coding upstream 1092593 40002864 ~ 40006538 (-)
XLOC_009467 CR759918.2 non-coding upstream 1158740 40069011 ~ 40069127 (-)
XLOC_009468 CR388129.1 non-coding upstream 1215138 40125409 ~ 40129541 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G311697 NA non-coding CI01000095 null 5007002 ~ 5013224 (-)