XLOC_009459 (robo1)


Basic Information

Item Value
gene id XLOC_009459
gene name robo1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 39277099 ~ 39820491 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018576
AGCTACACACCTGAAGAAACCGGATGTGATTAATGCGTTTGGCTTTAGTTGGCGTGCAACTTCACATTTGCTGGAGCATGTTTTTACACACTTCAGAGCGATTTTTCAGTCAAATATGATTAGTAATTGGTAATTTGTTCTGTTTTCCCTTAAAGAAGCAGATTTATAACATGTTTATCGGCTAAAATAACGTTAATCAGCTTTTCGGAGTAGCCCTACTCCAACATATATGTCGggtttaattataatatttacgtAGTATGACGTTCGAACCTGCCTGTAAATCAACAGTTATTTTGTAGATTCTCATATAGCCGTAAATCTGATGGCAATATGCAAATTACACCCATGACAGTGTTTGGATTTATATCAGTTTTGGATATATCAGTTGTCCGTATAATTTCAGTTCAGTTGAACaattctagaaagcaggtaaagACATTTCTTAATGCTATACTCGCAGCGCAATCACAATTGCTGAAAGTTCAGTGGCTCTGCGATTCAGCTTTAGGACCCGGGGAAGCAGAGCGCAGTGACGGAGAGCGCGCGGTGAGATCTGTATGCTTTACCGCACACGCACCGCATCAGCAGCGGGTGAGAACGCGGCAAAAGGCACTGTTCGCCGGCACACTCTCTGGTGCTCACCTCGCTCTTTTTGTGTGTCTGAACTGCCATAAACTAAACCCAGCCCTCGTTTCCCAGCGCATCTCAATCCCGAAGTGCTGAGCATCCCTTGGAAAGTTACGCACGGCTCGTTGGAGAGATGGAAGACTAGTTTTACTTCTGTTCTTGGAATTATCACGCATCGTCTGTGAGCAGGAAAGTGGATTATTCTTGGAAACAACCAGGGATGCCAGATCTGTAAGAAAGATGCAGGTCACATGGTCAGGCGCAGAAGTCCTCATCATTTTCACCTTGCTGCAGTTTGTCCATCCAGAGCTTGCTGAGGGTCCTTTGGCTCCAGACACGGGGACTCAGGATGGGACTAGCAATAGGGCCACAGAGACCCCCACTGCAGAACACGTTGACGACAACTCTCTGGGCTACACAGGATCCCGTCTGCGGCAGGAAGATTACGCACCCCGTATTGTTGAACACCCCTCTGATCTGATCGTATCCAAAGGCGAACCGGCCACCCTAAACTGCAAGGCTGAAGGACGTCCCACGCCCACAGTGGAGTGGTACAAAGATGGAGAACGAGTTGAAACCGACCGGGACAATCCTCGATCCCACCGCATGCTCCTGCCCACCGGATCTCTCTTCTTTCTCCGCATTGTTCACGGCCGGCGCAGCAAACCCGACGAAGGCTCCTACGTTTGTGTGGCACGTAACTATCTGGGAGAAGCCGTCAGCCACAACGCCTCGCTGGAAGTAGCTATTCTCCGAGATGATTTCCGACAGAACCCTGTGGACGTGATGGTGGCAGCGGGGGAGCCAGCTGTAATGGAGTGCCAGCCGCCCCGAGGACACCCAGAGCCCACCATCTCCTGGAAGAAAGATGGGGTCAATATAGACGACAGAGACGAGAGGATAACGATACGAGGAGGAAAGCTCATGATCACCAACACCAGAAAAACGGACGCGGGGAAGTACGTGTGCGTGGGAACCAACATGATGGGGGAACGAGAGAGCGAGATCGCGGAGTTGACTGTTCTCGagaGGCCCAGTTTCTTGCGAAAGCCGAGCAGCCAGTCCGTCCTTGTGGATCAGAGCGTTGAGTTCAGATGTGAAGCTCAAGGAGACCCCGTGCCCACCATCCGATGGAGGAAAGAGGACGGAGAACTGCCCAAGGGAAGGTATGAGATCTGGGAGGACCACACTCTCAAACTGAAGAGGCTGACTTCAGGAGACGCCGGTACTTACACCTGTCAGGCGGAGAACATGATGGGCAAGACGGAGGCCAGCGCCACCCTCACCGTCCACGTTCCTCCAGTGTTTGTGGTCCGACCCAGGAATCAGGTGGCGGGTATGGGCCGCACCGTCACCTTTCAGTGTGAAGCCACAGGAAGTCCTCAGCCTGCAATATTCTGGCAGAAAGAAGGCAGTCAGAATCTCCTGTTCTCGTCTCAGCCTCCTCCTCCGTCCAGCAGATTCTCTGTGTCTCAGACTGGAGATCTGACCATCACAGCAGTTGAGCGTTCAGATGGAGGATATTATAGCTGTCAGGCTCTCAACATCGCTGGCAGTGTGATCACCAAAGCCCTGCTGGAGGTTACAGACGTGATTTCAGACAGGCCTCCACCAATCGTCCGTCAGGGTCCAACCAACCAGACTGTGGCAGTGGACGGGACGGTGGTTCTGAGCTGCCAAGCCACCGGGACACCGATTCCTACCATCTTATGGAGGAAAGATGGAGTTCTGGTGTCCACACATGATTCCCGACTCAAGCAGCTGGACACTGGAGCCCTGCAGATTCGATACGCAAAGCTGGGCGACACTGGCATGTACACCTGCACGGCTTCCACCCCGAGCGGAGAGGCGTCCTGGAAGGCCTACCTGGAGGTGCAAGAGTTTGGTGCTCCAGTTCAACCGGGCCGTCCCACAGATCCCAACCTCATCCCCAGCGCCCCATCTAAACCAGACGTCACGGATGTCAGCCGCACCTCCGTGTCTCTTTCCTGGAAGCCGAATCTGAACGCTGGAGCCACACCCACCTCATACGTCATTGAGGCCTTCAGCCATGCAGCAGGCAGCAGCTGGCAGACGCTCGCCGATCATGTGAAGACGGAAAGCTTCGTGCTTAAGGGTCTGAAGCCAAGTGCCGTCTACCTGTTTCTGGTGAGAGCGGCCAATGCGTACGGCCTGAGCGACCCCAGTCCCATCAGCGACGCTGTCAAAACACAAGACGTCCCACCAACCAGCCAGGGAGTGGAGCATGGCCAGATCCAGAGAGAACTGGGAGATGTCGTCATTCACCTTCACAATCCCACAATTCTCTCATCGTCTTCCGTCAGAGTCCAGTGGACTGTGGAGCAGCAGTCTCAGTATATTCAGGGCTATAAGGTGATGTACCGTCCGTCTCCAGAAGGCGCTCCGCAGCGAGTGGATTGGGCCATGTTTGAGGTCGGAGCCCCGGGGGAGCACAGCGCTGTCGTCACCCAGCTCAAGAAGGGCATCACCTATGAGTTCAAAGTGCGCCCTTTCTTCAATGAGTTCCAGGGCACCGACAGCGACATCAAAGTGGGAAAGACCCTGGAGGAGGctcccAGCGCTGCTCCCAGAGGCGTCACCGTAACAGGAAGTGGAGACAACGGCACAGCAGTCCTGGTCGCCTGGCAACCGCCGCCAGAGGAGGAGCAGAACGGCGTTGTGCAGGAGTACAAGATCTGGTGTCTTGGTAATGAAAGCCGATACCACATCAACCGCACAGTGGATGGTTCTACACACTCGGTGTTGATTCCTGGTCTGGTGGCAGGAGTCACATACAGGCTAGAGGTGGCAGCAGGCACTGGGGCCGGACCCGGGGTCAAGAGCGACCCTACGTCCTTCCAGCTTGacTCTTCTGGCCGTGTTCTCCCGCCGCCGCTGGACGACGATAACACCATTTCCCAGCAGATCTCAGACGTGGTGCGTCAGCCGGCTTTCATCGCGGGCATCGGCGCCGCCTGCTGGATCATCCTGATGGTGTTCAGCATCTGGCTATACCGCCACCGCAAGAAGAGGAACGGCCTCAGCAGCAGCTACGCCGGCATCCGCAAAGTGCCCTCCTTCACCTTCACCCCCACAGTGGCCTATCAGAGAGGCGGAGAGGCCGTCAGCAGTGCAGGAAGGCCGGGTTTGTTGAATATAGGTGAACCAGCTACACAGCCCTGGCTTGCGGACACCTGGCCCAACAGCTGCTCCAATCACAATGACTGCACTATTAACTGCTGCACCGGCAGCAATGGAAACAGCGACAGCAACCTGGCAACTTACAGCCGcccagCCGACTGCATCGCCAACTACAGCAACCAGATGGACAACAAGGCCACCAACCTGCTGGCTCCAGATACTGGGCTTTACAGCGACGTTGACCTTTCAAACAAGATCAACGAGATGAAGACCTTCAACAGCCCCAACCTGAAGGACGGGCGTTTTATGGGGCCTGGTGGTCAACCCACACCCTACGCCACCACTCAGCTCATTCAATCCAGCCTGGCCAACAACAACATGAACAGCAGCAGTGGCGGAAGCGGAGGAGGAAGCGCTGACTTTAATGAGAAGCAGAGCTGGAAGAGCAGCCAGGGAACACCTCAGAAACAGGCCGACATCAACACACCACTGCAGTATAACGTCATGGAACAAAACAAACTCAACAAGGACCACTACCGAGGTGAGGGTCCCATCTCAGTCACCATCCCTTATAACCAGGCCCAGGACGTCCTCACAGGAGAAACCTACAGCAGCTCGGACAGAGGGAGCAGCACCTCTGGAAGTCAAGGGCAGAAAAAGGGTGGACGAACAACTAAACAAGCCAAACAGAATCCAATGAATTGGACTGAACTGTTGCCTCCTCCTCCGGTTAATCCGCCGCCATGTCAAGAATACACCCTGGTGATGGACGACAGTTACGACACAGACCTGCAGTGCCCTTTGCCGCCGTCTCGGATGTATCTGCAACCTGACGAGTTGGAAGAGGAGGAGGACGAGGTGGAGCTGGAGCGTGGACCTACACCTCCTGTACGGGGAGCTGCTTCTTCACCTGCTGCCGTGTCCTACAGCCACCAGTCCACCGCAACCCTAACCCCGTCCCCTCAGGAGGAGATGCATCCCATGCTGCAGGACAACCCTGATCTACATGAGCGCAGGAGACTGTTAGTGAGTCCACCTCCTCCACCACgacctctctctcctccacacacATACGGCTACATCTCCAGTCCCCTCGGCCTGGACACGGACGGCCTAGAGGaagaggatgatgatgaagaagaggGTGACGAAACGGACGCAGAGGTAGCTCGAGTCCACCAGCACCACATGATGCACCCTCACCAGCAGCACTTGCCCCAGCAGAGGGCTCTCCTGCGGGGTCTGGAACAAACCCCGGCCTCCAGCACCTGTGACCTGGAGAGCTCTGTGACTGGGTCTATGATTAACGGATGGGGTTCGGCTTCAGAAGAGGACAACGCCTCGTCAGGCCGTTCCAGTGCAGTCAGCTCATCGGATGGATCGTTCTTTACCGATGCCGATTTCGCCCAGGCTGTGGCAGCTGCGGCTGAATATGCTGGTCTTCGAGTGGCAAAGCATCCTGGGAAAGGACATCATCAGCTTCCAGTGTCTGGAGCACGGAAATACCAAAACCTCCCTGCGGGACACCGTCCAGGCAGCCCAGTGTCCACAGACAGTAACGTTAGCGCAGCCCCGGGTCAGAGGAGGCCCCTGAAGAGGCAAAAACAACATCCAGCTGCTCAGACAGGCTACCAGCGCCGAGAGGCCTACACAGAGGATCTCCCCCCTCCTCCGATTCCTCCTCCAGCCATGCTGAAGTCTCCAACACACCCGGCCAAAACCATCCCCGAGGGTCCACGGGGGGCCATGTCGCCAAGATCCAGCTCTGCGGATGGCAAGGACAGGCGAACGGGTGCTGGCGGGCCCAGGGTCAGGGACGGTTCAGACACTCGGACCAGCTCTTCAGAGCGGAGGGATGGCCAAGATGTACAGAGGGGTCAGAGAACGGGCAAGAATAGCAAACAAGATGAAGCCGTGAAGAGCCGCCAGCACCCAGGCTCAGAGGACATCCTACCTTACAGTCGTCCTTCTTTCCCAGCCGTCCACAGTCCTCGAGGAGAACGGGACCCCAGTTCCTCCAGTTCACTGTCCTCTCGGGGGTCTGGCGGGCGACGGAGAGGTGAAGGGCCACCAGGGGCCCGCAGAAACCCTGCAGACATTGGGCTAAACACCATAGGAGCCTTCCAGACTGGAGGGGACGAGCTTGAGATGGTGGAGAGCTgaagataaaaaagaaaaagctgtCTAAACTGCGTCAGTAACCATCTTCAGTGCAGATCGACCATCCCAGCGGTGTCTTTAACTGAAAACTACCGACCCTGAGTCACGTTTGGAAAAGTGACCAaccattcttcatttatttaccttAATTTCAATGtgcatttaaagaagaaaaaatagaCAGAAAAGAAAACACTAAAACAAAGGGTACATTTGAGAGGGGCTAAAGCGGTTTTGTTTCGATTCCAATGCAATATGATGCGTCCGTTTGCTCCTGAAACTTATAATGGCTTTGTTCACCATTGCGTGAAGGTTGTCAGTCAACGGTTACTGTAATGAAAACTCCAGGCACAAAGGGACTGGCTGACATGTACATACACGTGTAAACATATCTAACTGTCTTTTATAATCCATTGTGGTACATTCGATTTGTCTTCCTTGGCttctttgaatcattttaaatgacaccagttaatataatttgtttttatagcCGCCGTCCTGGTTGTAAATTGTCATAGTGTTTAAACTGCCCCAGGAAAAGTGCCACATTTTGAGagttcttgtttgtttttgtaatgcaCTGTTATCATTTTTTGTCATTGTCGATGTTTGTTGTTCTATGTTTGACTTTGGTTTTAAAAGCACAATCACTAAACTTTATTTTGAACCATGTTATTGCTGAAAACCTTTTTGTCTTACGCGAGGGGAGCGCGGACGGTACGACAAAAGGCCTTGTTAAACCTGTCGATGTAGGGTTGTGAgaaacgaaagaaagaaaaaaaaaaaggataagctGTTtacaaatgagtgaatgaatggaaACGAATCCCCGCATCCTTACCTTCGGTGTCTTTTCCAGATTCTCATTCCAGCTCAAGACGTCCTGCAGAAATGAAATGAATAAGCAGGGATGTTATTGTTTACGAAAGTGCTGCACCACCTCTGCACTTTTGTTATTAAAaagagaaatcatttgttttccGATTTACATATGCACTTAACAGGAAATGGGCGTCGGCTTGAGAATCTGGGGTGCTCGTGATAGGCTGGCCGATGTGTCGGTCACGCTTTAATAGGGGTGAGGATGTGAGTGTTAATTCATTTGACATCTGCAAGCATTTGTTTCTTAAAAcagaaaagcaaataaaaaaaatgaagaaaaaaaataaatcaaaatactgAAATTGACCtgtttgtgtttgatttatttatgcgTTTGTGATTGAGCCATTTTAATTTAGTGTTTGATTTATGAGCCCAGGAAAAACCTAAATAATTAACCCTTACCAAGTCTGTTATGGTATAGCCTAAAACAAAGTAGACAAtcttcacatttatttatttatttattttttacaggttTTGCAAAATAGTATAAATATAAGACTTTCTGAAAATAAttatttccttcattcattttcttttcagcctagtccccttattaatctgggaccacagtggaatgaatcgccaacttatccagcatattttcacagcagatgcccattactgggaaacacccatacacactcattcacacagatacacctcagacaatttagccagcccaattcacctgtactgcatgtctttggacttgtgggggaaaccggagcacgcggaggaaacccacacgaacagggggagaacatgcaaacttcacacagaaatgccaactgccccagctAAGGCTTGAACCCACaagctttttgctgtgaggcgattgtgctacccactgcacc
>TCONS_00018577
ACTGTTCGCCGGCACACTCTCTGGTGCTCACCTCGCTCTTTTTGTGTGTCTGAACTGCCATAAACTAAACCCAGCCCTCGTTTCCCAGCGCATCTCAATCCCGAAGTGCTGAGCATCCCTTGGAAAGTTACGCACGGCTCGTTGGAGAGATGGAAGACTAGTTTTACTTCTGTTCTTGGAATTATCACGCATCGTCTGTGAGCAGGAAAGTGGATTATTCTTGGAAACAACCAGGGATGCCAGATCTGTAAGAAAGATGCAGGTCACATGGTCAGGCGCAGAAGTCCTCATCATTTTCACCTTGCTGCAGTTTGTCCATCCAGAGCTTGCTGAGGGTCCTTTGGCTCCAGACACGGGGACTCAGGATGGGACTAGCAATAGGGCCACAGAGACCCCCACTGCAGAACACGTTGACGACAACTCTCTGGGCTACACAG
>TCONS_00019222
GTTTTTACACACTTCAGAGCGATTTTTCAGTCAAATATGATTAGTAATTGGTAATTTGTTCTGTTTTCCCTTAAAGAAGCAGATTTATAACATGTTTATCGGCTAAAATAACGTTAATCAGCTTTTCGGAGTAGCCCTACTCCAACATATATGTCGggtttaattataatatttacgtAGTATGACGTTCGAACCTGCCTGTAAATCAACAGTTATTTTGTAGATTCTCATATAGCCGTAAATCTGATGGCAATATGCAAATTACACCCATGACAGTGTTTGGATTTATATCAGTTTTGGATATATCAGTTGTCCGTATAATTTCAGTTCAGTTGAACaattctagaaagcaggtaaagACATTTCTTAATGCTATACTCGCAGCGCAATCACAATTGCTGAAAGTTCAGTGGCTCTGCGATTCAGCTTTAGGACCCGGGGAAGCAGAGCGCAGTGACGGAGAGCGCGCGGTGAGATCTGTATGCTTTACCGCACACGCACCGCATCAGCAGCGGCGCATCTCAATCCCGAAGTGCTGAGCATCCCTTGGAAAGTTACGCACGGCTCGTTGGAGAGATGGAAGACTAGTTTTACTTCTGTTCTTGGAATTATCACGCATCGTCTGTGAGCAGGAAAGTGGATTATTCTTGGAAACAACCAGGGATGCCAGATCTGTAAGAAAGATGCAGGTCACATGGTCAGGCGCAGAAGTCCTCATCATTTTCACCTTGCTGCAGTTTGTCCATCCAGAGCTTGCTGAGGGTCCTTTGGCTCCAGGGCAGGCTTATGTGCTTTTCCCATGTGGCTCTGGTGTGTTTTTT
>TCONS_00018578
ACTGTTCGCCGGCACACTCTCTGGTGCTCACCTCGCTCTTTTTGTGTGTCTGAACTGCCATAAACTAAACCCAGCCCTCGTTTCCCAGCGCATCTCAATCCCGAAGTGCTGAGCATCCCTTGGAAAGTTACGCACGGCTCGTTGGAGAGATGGAAGACTAGTTTTACTTCTGTTCTTGGAATTATCACGCATCGTCTGTGAGCAGGAAAGTGGATTATTCTTGGAAACAACCAGGGATGCCAGATCTGTAAGAAAGATGCAGGTCACATGGTCAGGCGCAGAAGTCCTCATCATTTTCACCTTGCTGCAGTTTGTCCATCCAGAGCTTGCTGAGGGTCCTTTGGCTCCAG

Function

symbol description
robo1 Predicted to enable axon guidance receptor activity. Acts upstream of or within axon guidance and endocardial progenitor cell migration to the midline involved in heart field formation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in basal plate midbrain region; epidermis; nervous system; pectoral fin; and pharyngeal arch. Orthologous to human ROBO1 (roundabout guidance receptor 1).

GO:

id name namespace
GO:0016199 axon midline choice point recognition biological_process
GO:0035385 Roundabout signaling pathway biological_process
GO:0003262 endocardial progenitor cell migration to the midline involved in heart field formation biological_process
GO:0007411 axon guidance biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008046 axon guidance receptor activity molecular_function

KEGG:

id description
ko04360 Axon guidance
ko04515 Cell adhesion molecules

ZFIN:

id description
ZDB-GENE-000209-3 Predicted to enable axon guidance receptor activity. Acts upstream of or within axon guidance and endocardial progenitor cell migration to the midline involved in heart field formation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in basal plate midbrain region; epidermis; nervous system; pectoral fin; and pharyngeal arch. Orthologous to human ROBO1 (roundabout guidance receptor 1).

Ensembl:

ensembl_id ENSDARG00000026784

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018576 False 7676 mRNA 0.52 31 39277099 39820491
TCONS_00018577 False 437 mRNA 0.51 3 39629830 39819877
TCONS_00019222 False 821 lncRNA 0.43 4 39763470 39820412
TCONS_00018578 True 350 mRNA 0.50 2 39763650 39819877

Neighbor

gene id symbol gene type direction distance location
XLOC_009458 NA coding downstream 324670 38948423 ~ 38952429 (-)
XLOC_009457 NA coding downstream 366828 38901933 ~ 38910271 (-)
XLOC_009456 NA coding downstream 726295 38547827 ~ 38550804 (-)
XLOC_009455 NA coding downstream 851254 38425548 ~ 38425845 (-)
XLOC_009454 trpc2a coding downstream 915312 38339386 ~ 38361787 (-)
XLOC_009460 NA coding upstream 27000 39847491 ~ 39848822 (-)
XLOC_009461 msh5 coding upstream 113804 39934295 ~ 39955785 (-)
XLOC_009462 lypc coding upstream 137318 39957809 ~ 39963009 (-)
XLOC_009463 rps5 coding upstream 144452 39964943 ~ 39971756 (-)
XLOC_009464 NA coding upstream 182373 40002864 ~ 40006538 (-)
XLOC_009453 NA non-coding downstream 979365 38296157 ~ 38297734 (-)
XLOC_009467 CR759918.2 non-coding upstream 248520 40069011 ~ 40069127 (-)
XLOC_009468 CR388129.1 non-coding upstream 304918 40125409 ~ 40129541 (-)
XLOC_009471 BX571794.3 non-coding upstream 535888 40356379 ~ 40360753 (-)

Expression


Co-expression Network