XLOC_009462 (lypc)


Basic Information

Item Value
gene id XLOC_009462
gene name lypc
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 39957809 ~ 39963009 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018584
GGAACCGATGATGAGCTACACCTTACATCTGACCTGAAGACAAGACCGCTCGTGATCGGATGTGCAAATCGGAGTATTCTGACATTGTAAATTGTTTTAGACCAAGAAACACAATAGAAAATGGCTTATGTTTTGAGATGCATTCTCTTCCTTTATCTTCTACCATCAGTGGTTCCTCTATTGTGTTATACCTGTGTTTTTCCTTCAATCTCACCACTGGACTGCCTCAAGTTCCCCACTAAATGTTCACTGGGCCAAGTCTGTCTCTCCAGCAAAGCTGTTGCCCGGCGAGgGGATTTGGAGATACATTTTTATGAAAAGAGTTGTGCTCTTCCAGCTCTGTGTGGATTAACAGGAGAGAAGTTCATCCAGGGCTTAAACTTCACCTTTCGCAGTGACTGCTGTGATACTCTACTGTGCAACCACAGCACAGCTAATTCTGCGTTCGTCTGGCCCAGCATTCTGCTCTCACTGCTTTTCACATTGTTTTATTCACAGTAAGCATGATTAAAGGACTCAAATTGAAAATAAACAAGGCGGAATTAACAACCACAAAACCTTTGGGGggaaatgttaattaaaataagaCTGCTTTGTAGGCTAAATTAATCAGTGCATTCATATTCTGCTGAgagattaaagggacagtttaccccaaaataaataaataaataaaataatcattctcaagtggttccaaaccactcttttttgttgaacacacacacacaaatatttttttttaaaatgatgaaaaactgTAACCCTTTTACTTTTTTAGTAGGAAAgtcatggaagtcaatgactaACATTTTTTTCAAACTCTCTTcttttattaacaaaagaaagataCTTAAAATTTTAATCAAGTAAACAAgtattgggtgaactattcctttaagagaaTACAAGAACGCGCATGTATCTTTATTTCAAGTTTCTAACAAGACTGTTTCTATCAGCATTGCTTTCTTTATATATGGAtaaatttaactgaaaataaaaacattttggtgTGT

Function

symbol description
lypc Acts upstream of or within circadian rhythm. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in eye; heart; integument; intestine; and post-vent region.

GO:

id name namespace
GO:0007623 circadian rhythm biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-361 Acts upstream of or within circadian rhythm. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in eye; heart; integument; intestine; and post-vent region.

Ensembl:

ensembl_id ENSDARG00000097804

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018584 True 1019 mRNA 0.36 3 39957809 39963009

Neighbor

gene id symbol gene type direction distance location
XLOC_009461 msh5 coding downstream 2024 39934295 ~ 39955785 (-)
XLOC_009460 NA coding downstream 108987 39847491 ~ 39848822 (-)
XLOC_009459 robo1 coding downstream 137318 39277099 ~ 39820491 (-)
XLOC_009458 NA coding downstream 1005380 38948423 ~ 38952429 (-)
XLOC_009457 NA coding downstream 1047538 38901933 ~ 38910271 (-)
XLOC_009463 rps5 coding upstream 1934 39964943 ~ 39971756 (-)
XLOC_009464 NA coding upstream 39855 40002864 ~ 40006538 (-)
XLOC_009465 lpar5b coding upstream 77146 40040155 ~ 40041455 (-)
XLOC_009466 gpr55a coding upstream 88209 40051218 ~ 40065296 (-)
XLOC_009467 CR759918.2 coding upstream 106002 40069011 ~ 40069127 (-)
XLOC_009456 NA non-coding downstream 1407005 38547827 ~ 38550804 (-)
XLOC_009455 NA non-coding downstream 1531964 38425548 ~ 38425845 (-)
XLOC_009468 CR388129.1 non-coding upstream 162400 40125409 ~ 40129541 (-)
XLOC_009471 BX571794.3 non-coding upstream 393370 40356379 ~ 40360753 (-)
XLOC_009472 NA non-coding upstream 1105765 41068774 ~ 41072197 (-)

Expression


Co-expression Network