XLOC_009456



Basic Information


Item Value
gene id XLOC_009456
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 38547827 ~ 38550804 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00019221
CCCCTTGTTCCATCTGCCCTTATTCCTGCCCTGAAGGGACGGATGAGGAACATCCAGGAAGACCAACAGAAATAAAGTGAGTCTCACAGGAGAGAGGAGGAACATCTCCAGAGGTCTCGGGGTCGAAAGGTGAAGGTCCTTCACCTGCCCGTGTGTATGCTCGCCGGAGCACGAGGGGCGCGCGGAATCTGGCTTGTACGTCCTGTCATCGGTCACCGTCCAGATGCAAGTGAGGAGTGTGTgagatctgaa

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00019221 True 252 lncRNA 0.56 2 38547827 38550804

Neighbor


gene id symbol gene type direction distance location
XLOC_009455 NA coding downstream 121982 38425548 ~ 38425845 (-)
XLOC_009454 trpc2a coding downstream 186040 38339386 ~ 38361787 (-)
XLOC_009453 NA coding downstream 250093 38296157 ~ 38297734 (-)
XLOC_009452 rhoga coding downstream 329507 38201964 ~ 38218320 (-)
XLOC_009451 chrna10a coding downstream 354444 38179904 ~ 38193383 (-)
XLOC_009457 NA coding upstream 351129 38901933 ~ 38910271 (-)
XLOC_009458 NA coding upstream 397619 38948423 ~ 38952429 (-)
XLOC_009459 robo1 coding upstream 726295 39277099 ~ 39820491 (-)
XLOC_009460 NA coding upstream 1296687 39847491 ~ 39848822 (-)
XLOC_009461 msh5 coding upstream 1383491 39934295 ~ 39955785 (-)
XLOC_009444 CR944667.3 non-coding downstream 666940 37876716 ~ 37880887 (-)
XLOC_009432 CR848836.1 non-coding downstream 818661 37727834 ~ 37729166 (-)
XLOC_009422 CR848749.2 non-coding downstream 1283562 37259354 ~ 37264265 (-)
XLOC_009464 NA non-coding upstream 1452060 40002864 ~ 40006538 (-)
XLOC_009467 CR759918.2 non-coding upstream 1518207 40069011 ~ 40069127 (-)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location