XLOC_009451 (chrna10a)


Basic Information

Item Value
gene id XLOC_009451
gene name chrna10a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 38179904 ~ 38193383 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018563
cagcaTCTGTCCTTTGATCTAAAAAACACGACTTCAAGCGCTCGGATGATTCTTTCACCTCTCATTTAATGCCTGATATTCAAGCTTGATCTGCAGTGAGCTGAACCGCGAGATGACCCACAAACATTTGCAATATTTCACCTTTTGTGTCGTCTGCCATATGATTATACCAGTTTGCTGGGGAGCCAATGGAATATATGCTCAAAAACTgctcaatgatttatttaacaacTACACAAGTGCTCTGAGGCCAGTGGAGGATACAGAAGACATCCTGAACGTCACGCTTCAGATCACCCTCTCCCAAATCATCGACATGGACGAGCGTAACCAGATTCTGACGGCATATTTGTGGATACGGCAGGTGTGGATCGACAAGTATCTCACCTGGAATAAAGAGAACTATGATGGACTTGACACCATCCGAATTCCTGGTAGTTATGTTTGGAGACCTGATATAGTTCTATATAACAGTGCAGATGATCACTTTACCAGCACTATGGACACCAACGTGGTCATCAGGCATGATGGTCAGATCATGTGGGACGCCCCAGCCATCACCAAAAGCTCCTGTAAAGTGGACGTCTCCTTCTTCCCCTTTGATGCCCAGCAGTGCCGCCTGACCTACGGCTCGTGGACCTACAACGGCAACCAGCTGGACATTCTGAACGCCATGGAAAGTGCAGATCTCGCCGATTTGGTCGATAACGTAGAATGGGAGGTGTTGGGAATGCCGGCCAAGCGAAACATCATTCTGTATGGATGCTGTGCCGATCCGTATCCTGATGTGACGTACACCCTGAAGCTGAAGAGAAGAGCGTCGTTTTATGTGTTCAACCTGCTGATCCCCTGTGTGATGATCTCTTTCTTGGCTCCTCTGGGTTTCTATCTGCCGGCAGACTCGGGAGAGAAGGTGTCTCTGGGTGTTACGGTGATGCTGGCGCTCACTGTGTTTCAGCTGCTGGTGGCTGAGATCATGCCTCCATCTGAGAATGTGCCTCTTATAGGGAAATATTATATAGCCACGATGACCATGATCACTGCATCCACAGCCCTCACCATCTTCGTTATGAACATCCACCACTGTGGCCCAGATGCCAAACCTGTTCCAGACTGGGCCAAGAAATTCATCCTGCAGTATCTGGCCAGGATTTGCTTCGTCTACGAAGTGGGTGAAAACTGCATGACGCCGCAGCCAGAGAAACCAGATCCTCAACCGCAGAAGCCTCAGGACTGCAACTGCAACATGAACGGCCAAGCTGGAAAAGACGACTTTGTGTTTAAATTCGACAGAAATCAAGAAGCCACATCTCCGAAGCTGCTTGAGGACAGAGAAGATATGTCACAAATATTGAGCCCGGCGTGCTCACTAGGAAAACATCCCACCTGTCGGTATGGGGTGTGGAAGGAGGGAGTGTTCATGAGTATGGATTGCGGCGATGGAGCGGCTGAGACTGGAAAACCCATAGGAAGAGGACAGGAAGGGTGCAGAGATCATGACTCTGGGTTTAAATCACAGTGCAAGTgtgatcagcagcatctcctgagGAATATTGAGTATGTGGCAAACTGTTACCGTGATCAGAGAGCTACGGCGAGACGAACAGGAGAGTGGAAGAAAGTCGCCAAAGTTCTGGACCGATTCTTCATGTGGCTGTTCTTCATTATGGTTTTCTTCATGAGCCTGCTTATAATGGGGAAAGCCATTTGACATGGAGGTGACTGAAAGAAGGACATGACTGAAATAATGCAAGTCTAGTAATATTTATTACAGCACTTCATACACAcaaaatttattcaattaaatttattcaattttttgtaaggtaagtggttgccaacaatt
>TCONS_00018564
ATGATTTTATACTATATCCTTAaacaattctttctttctttgttagTTTGCTGGGGAGCCAATGGAATATATGCTCAAAAACTgctcaatgatttatttaacaacTACACAAGTGCTCTGAGGCCAGTGGAGGATACAGAAGACATCCTGAACGTCACGCTTCAGATCACCCTCTCCCAAATCATCGACATGGACGAGCGTAACCAGATTCTGACGGCATATTTGTGGATACGGCAGGTGTGGATCGACAAGTATCTCACCTGGAATAAAGAGAACTATGATGGACTTGACACCATCCGAATTCCTGGTAGTTATGTTTGGAGACCTGATATAGTTCTATATAACAGTGCAGATGATCACTTTACCAGCACTATGGACACCAACGTGGTCATCAGGCATGATGGTCAGATCATGTGGGACGCCCCAGCCATCACCAAAAGCTCCTGTAAAGTGGACGTCTCCTTCTTCCCCTTTGATGCCCAGCAGTGCCGCCTGACCTACGGCTCGTGGACCTACAACGGCAACCAGCTGGACATTCTGAACGCCATGGAAAGTGCAGATCTCGCCGATTTGGTCGATAACGTAGAATGGGAGGTGTTGGGAATGCCGGCCAAGCGAAACATCATTCTGTATGGATGCTGTGCCGATCCGTATCCTGATGTGACGTACACCCTGAAGCTGAAGAGAAGAGCGTCGTTTTATGTGTTCAACCTGCTGATCCCCTGTGTGATGATCTCTTTCTTGGCTCCTCTGGGTTTCTATCTGCCGGCAGACTCGGGAGAGAAGGTGTCTCTGGGTGTTACGGTGATGCTGGCGCTCACTGTGTTTCAGCTGCTGGTGGCTGAGATCATGCCTCCATCTGAGAATGTGCCTCTTATAGGGAAATATTATATAGCCACGATGACCATGATCACTGCATCCACAGCCCTCACCATCTTCGTTATGAACATCCACCACTGTGGCCCAGATGCCAAACCTGTTCCAGACTGGGCCAAGAAATTCATCCTGCAGTATCTGGCCAGGATTTGCTTCGTCTACGAAGTGGGTGAAAACTGCATGACGCCGCAGCCAGAGAAACCAGATCCTCAACCGCAGAAGCCTCAGGACTGCAACTGCAACATGAACGGCCAAGCTGGAAAAGACGACTTTGTGTTTAAATTCGACAGAAATCAAGAAGCCACATCTCCGAAGCTGCTTGAGGACAGAGAAGATATGTCACAAATATTGAGCCCGGCGTGCTCACTAGGAAAACATCCCACCTGTCGGTATGGGGTGTGGAAGGAGGGAGTGTTCATGAGTATGGATTGCGGCGATGGAGCGGCTGAGACTGGAAAACCCATAGGAAGAGGACAGGAAGGGTGCAGAGATCATGACTCTGGGTTTAAATCACAGTGCAAGTgtgatcagcagcatctcctgagGAATATTGAGTATGTGGCAAACTGTTACCGTGATCAGAGAGCTACGGCGAGACGAACAGGAGAGTGGAAGAAAGTCGCCAAAGTTCTGGACCGATTCTTCATGTGGCTGTTCTTCATTATGGTTTTCTTCATGAGCCTGCTTATAATGGGGAAAGCCATTTGA

Function

symbol description
chrna10a Predicted to enable acetylcholine-gated cation-selective channel activity. Predicted to be involved in several processes, including chemical synaptic transmission; ion transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Orthologous to human CHRNA10 (cholinergic receptor nicotinic alpha 10 subunit) and CHRNA9 (cholinergic receptor nicotinic alpha 9 subunit).

GO:

id name namespace
GO:0042391 regulation of membrane potential biological_process
GO:0050877 nervous system process biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0006811 ion transport biological_process
GO:0007165 signal transduction biological_process
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022848 acetylcholine-gated cation-selective channel activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-725 Predicted to enable acetylcholine-gated cation-selective channel activity. Predicted to be involved in several processes, including chemical synaptic transmission; ion transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Orthologous to human CHRNA10 (cholinergic receptor nicotinic alpha 10 subunit) and CHRNA9 (cholinergic receptor nicotinic alpha 9 subunit).

Ensembl:

ensembl_id ENSDARG00000011113

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018563 False 1846 mRNA 0.47 5 38179904 38193383
TCONS_00018564 True 1584 mRNA 0.48 4 38180039 38186537

Neighbor

gene id symbol gene type direction distance location
XLOC_009450 si:dkey-24p1.7 coding downstream 2136 38157487 ~ 38177768 (-)
XLOC_009449 irgq2 coding downstream 25288 38150465 ~ 38154616 (-)
XLOC_009448 si:dkey-24p1.1 coding downstream 50059 38101135 ~ 38129845 (-)
XLOC_009447 si:dkey-238d18.6 coding downstream 170560 38008502 ~ 38009344 (-)
XLOC_009446 si:dkey-238d18.15 coding downstream 250769 37927949 ~ 37929135 (-)
XLOC_009452 rhoga coding upstream 8581 38201964 ~ 38218320 (-)
XLOC_009453 NA coding upstream 102774 38296157 ~ 38297734 (-)
XLOC_009454 trpc2a coding upstream 146003 38339386 ~ 38361787 (-)
XLOC_009455 NA coding upstream 232165 38425548 ~ 38425845 (-)
XLOC_009456 NA coding upstream 354444 38547827 ~ 38550804 (-)
XLOC_009444 CR944667.3 non-coding downstream 299017 37876716 ~ 37880887 (-)
XLOC_009432 CR848836.1 non-coding downstream 450738 37727834 ~ 37729166 (-)
XLOC_009422 CR848749.2 non-coding downstream 915639 37259354 ~ 37264265 (-)
XLOC_009420 AL953844.1 non-coding downstream 1305538 36874251 ~ 36874366 (-)
XLOC_009419 NA non-coding downstream 1395131 36784479 ~ 36784773 (-)
XLOC_009457 NA non-coding upstream 708550 38901933 ~ 38910271 (-)
XLOC_009458 NA non-coding upstream 755040 38948423 ~ 38952429 (-)

Expression


Co-expression Network