XLOC_009466 (gpr55a)


Basic Information

Item Value
gene id XLOC_009466
gene name gpr55a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 40051218 ~ 40065296 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018588
CACCAAACAGTGCAGAGGCGGACGCGTGAGCGCATAACAGTAGTTTCTCTCTTCACAAAAAACACGCCAGTCTCTGTCTGAACACGGTTCAACAGCATGTAGCGGAAACTTAAACAGAACCGCCTCGGCACGCTATGTCtcaatacttttttcttttacaaatcaACGTGAGGATCTGCCTTGAAGAAACTCTGCCTTGAAGTCTGGATAACAGAAGACACAGATGAAAAAGACAACACTTTACTGACTGTGGGAATGAACTCCTCCAACTCATCgACAGACTGTGAATGGGTTTGCTGGTTCCAGAGGTGTGTGTACGTGCCCATCCTGGTCTTTGGCATCCCTTTGATCCTGGGCTCTCTGTGGCAGCTGCTGTTTCGCGTTCGACGCTGGAGCGAGTCCACCGTTTACCTCATCAACCTGATCATCAACGACAGCCTGCTGATGCTGTCCTTGCCCTTCAAAATACACGCATACAAGAAGGTATGGACACTCGGCCGAACCTTCTGCTCCCTGCTGGAGAGCCTGCTCTACGTCAACATCTACGGCAGCATATTATTGAGCGTGTGCATTGCTGTCGATCGCTATATCGCTCTACAGTTTCCATTCATTGCCTTGCGATTGCGCTCTCCACGCAAGTCGGTGATCATATGCCTAATTCTGTGGATATTAGTATTTGCATGCAGCACTCCCATCTACAAACTTCACGATGAACCTGTCAATAAAACCGACAAAGTTTACTGTTTCCAGCAGTTCTCCAATAAAACCTGGTCAAAGAGTTGGATCGTGGTTTCAATGGAGACGGTGTTTTGCAGCAGCACGATAGTGATGGTGTTCTGCTCGGTGCGAGTTGTGCAGATTTTACACAGTATGAGAGCACGAAACCCTGGAGATCCCAAACTGCGCAGTAACAAGAGCTTGAAAATCGTGCTCAGCAACCTGGGGGTCTTTCTGGCATGCTTCATTCCTTATCACATAGCGGCTCTCATATACTTCCATGCCAAGACGAACAACTGGAACGAAGACATCATCAGTCACCTGCGTTACTTTGTTCATGTCAGCATATGCTTTAGCAATGTGAACATCTTGGCAGATGGAGCGTGCTACTATTTCATCCTTAAAGAGAACCTGGAGTCTGCGCAGAAAGAGAGGAGAATGGCGATACACGTCAGAGAGACACGCATACGGGGTGGATCAAGGAGtcttacatttggagaaaaccataACGGCTCTTCTGTAAGCAGTGAAAAGATGGAGATATGTGTGGATACTGGTTTTACTTAAGAATCTACACAAACACTCAGGGAAAAGATGGAGATATGTGTAGATACTGGTTTTACTTAAGGGTCTACACAAACACTCAGGGAAAAAATGGAGATATGTGTAGATACTGGTTTTACTTAATGATCTACACAAACACTCAGGGAAAAGATGGAGATATGTGTAGATACTGGTTTTACTTAAGGATCTACACAAACACTCAGGGAAAAGATGGAGATAGGTGTGGATACTGGTTTTAAATTAGCTTCTACATAAACACTTGGGGAAAGGATGGAAGATACAGCAGggggaataagtattgaacacgtcatgttttttcctgggaataatattacTAAAGGAGCTGtagacatggaattgaaccagattttggtaaaaaaaaaaaaaaaaaaatacaaacataaaaataaaacaaaacaaagaatgtgaaaaa
>TCONS_00018589
GCATAACAGTAGTTTCTCTCTTCACAAAAAACACGCCAGTCTCTGTCTGAACACGGTTCAACAGCATGTAGCGGAAACTTAAACAGAACCGCCTCGGCACGCTATGTCtcaatacttttttcttttacaaatcaACGTGAGGATCTGCCTTGAAGAAACTCTGCCTTGAAGTCTGGATAACAGAAGACACAGATGAAAAAGACAACACTTTACTGACTGTGGGAATGAACTCCTCCAACTCATCgACAGACTGTGAATGGGTTTGCTGGTTCCAGAGGTGTGTGTACGTGCCCATCCTGGTCTTTGGCATCCCTTTGATCCTGGGCTCTCTGTGGCAGCTGCTGTTTCGCGTTCGACGCTGGAGCGAGTCCACCGTTTACCTCATCAACCTGATCATCAACGACAGCCTGCTGATGCTGTCCTTGCCCTTCAAAATACACGCATACAAGAAGGTATGGACACTCGGCCGAACCTTCTGCTCCCTGCTGGAGAGCCTGCTCTACGTCAACATCTACGGCAGCATATTATTGAGCGTGTGCATTGCTGTCGATCGCTATATCGCTCTACAGTTTCCATTCATTGCCTTGCGATTGCGCTCTCCACGCAAGTCGGTGATCATATGCCTAATTCTGTGGATATTAGTATTTGCATGCAGCACTCCCATCTACAAACTTCACGATGAACCTGTCAATAAAACCGACAAAGTTTACTGTTTCCAGCAGTTCTCCAATAAAACCTGGTCAAAGAGTTGGATCGTGGTTTCAATGGAGACGGTGTTTTGCAGCAGCACGATAGTGATGGTGTTCTGCTCGGTGCGAGTTGTGCAGATTTTACACAGTATGAGAGCACGAAACCCTGGAGATCCCAAACTGCGCAGTAACAAGAGCTTGAAAATCGTGCTCAGCAACCTGGGGGTCTTTCTGGCATGCTTCATTCCTTATCACATAGCGGCTCTCATATACTTCCATGCCAAGACGAACAACTGGAACGAAGACATCATCAGTCACCTGCGTTACTTTGTTCATGTCAGCATATGCTTTAGCAATGTGAACATCTTGGCAGATGGAGCGTGCTACTATTTCATCCTTAAAGAGAACCTGGAGTCTGCGCAGAAAGAGAGGAGAATGGCGATACACGTCAGAGAGACACGCATACGGGGTGGATCAAGGAGtcttacatttggagaaaaccataACGGCTCTTCTGTAAGCAGTGAAAAGATGGAGATATGTGTGGATACTGGTTTTACTTAATGATCTACACAAACACTCAGGGAAAAGATGGAGATATGTGTAGATACTGGTTTTACTTAAGGATCTACACAAACACTCAGGGAAAAGATGGAGATAGGTGTGGATACTGGTTTTAAATTAGCTTCTACATAAACACTTGGGGAAAGGATGGAAGATACAGCAGggggaataagtattgaacacgtcatgttttttcctgggaataatattacTAAAGGAGCTGtagacatggaattgaaccagattttggtaaaaaaaaaaaaaaaaaaatacaaac

Function

symbol description
gpr55a Predicted to enable G protein-coupled receptor activity. Predicted to be involved in positive regulation of Rho protein signal transduction and positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G protein-coupled signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human GPR55 (G protein-coupled receptor 55).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0035025 positive regulation of Rho protein signal transduction biological_process
GO:0051482 positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G protein-coupled signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051113-260 Predicted to enable G protein-coupled receptor activity. Predicted to be involved in positive regulation of Rho protein signal transduction and positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G protein-coupled signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human GPR55 (G protein-coupled receptor 55).

Ensembl:

ensembl_id ENSDARG00000043447

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018588 False 1714 mRNA 0.44 2 40051218 40065296
TCONS_00018589 True 1530 mRNA 0.45 3 40051251 40065265

Neighbor

gene id symbol gene type direction distance location
XLOC_009465 lpar5b coding downstream 9763 40040155 ~ 40041455 (-)
XLOC_009464 NA coding downstream 44680 40002864 ~ 40006538 (-)
XLOC_009463 rps5 coding downstream 79462 39964943 ~ 39971756 (-)
XLOC_009462 lypc coding downstream 88209 39957809 ~ 39963009 (-)
XLOC_009461 msh5 coding downstream 95433 39934295 ~ 39955785 (-)
XLOC_009467 CR759918.2 coding upstream 3715 40069011 ~ 40069127 (-)
XLOC_009468 CR388129.1 coding upstream 60113 40125409 ~ 40129541 (-)
XLOC_009469 si:ch211-281l24.3 coding upstream 72268 40137564 ~ 40175894 (-)
XLOC_009470 kcnj13 coding upstream 151960 40217256 ~ 40267485 (-)
XLOC_009471 BX571794.3 coding upstream 291083 40356379 ~ 40360753 (-)
XLOC_009460 NA non-coding downstream 202396 39847491 ~ 39848822 (-)
XLOC_009458 NA non-coding downstream 1098789 38948423 ~ 38952429 (-)
XLOC_009457 NA non-coding downstream 1140947 38901933 ~ 38910271 (-)
XLOC_009456 NA non-coding downstream 1500414 38547827 ~ 38550804 (-)
XLOC_009472 NA non-coding upstream 1003478 41068774 ~ 41072197 (-)
XLOC_009474 NA non-coding upstream 1172949 41238245 ~ 41246009 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000095_04306135_04307082 NA coding CI01000095 null 4306135 ~ 4307732 (+)