G206656


Basic Information

Item Value
gene id G206656
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 3084546 ~ 3086137 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU234524
CCAGGTTTTGCCGTTATAAAATTCTATTGTTGCCATGAACACGTATTTGTTAATACAGACAGGGTATGCTACGTATGTAATTTAATCAATGTTTATGTGTATAAATGCTTAAATTAAAATGTTAATGTTTAAAGCGGACGGTCATGTCTCGTAAGACTTGGATTGAACCTGCTCGCTCCGTGTAACATTTGAAGTGAAGTTTTCAAATTACTCTTAAGGTGCTTTATGCAACTGGGCACGGACATCCTTATACTCCAAAAAACAAATAAAAGCATATAAAACTATGGAGGCATACTACTTTTTTTGTTAATGACTGCACAATGTTTCAGAATTCTTCATTTCAGTTCTTCTTCAAACCTTAATTTCTCTGGATGGACAGCACCAACTATCACTTACCATTTCCTCAGGCTTTTCAAATGAGCTGACTGTCAATGAGTCCAAAGTCAGATCTTGGAGAGGTGAAGAGGGTCTCATCTCTCTGTGGTGGGCTTCAGTGCTGCTCTTTTGGTTTTGTGATGGAGTCTGATGTGTCTGTGGGGAATCCAACTGCTGCACTGACTGCAAACCAAAAAAAAAAGATCAGAGATGTATGACAGATTAAATTCATTTAACATTGTCTAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU234524 True 621 lncRNA 0.37 2 3084546 3086137

Neighbor

gene id symbol gene type direction distance location
CI01000049_03064154_03077534 NA coding upstream 6549 3064154 ~ 3077997 (+)
CI01000049_02997869_03042673 PRKX coding upstream 41783 2997591 ~ 3042763 (+)
CI01000049_02827101_02828949 NA coding upstream 254786 2825830 ~ 2829760 (+)
CI01000049_02732074_02754633 NA coding upstream 329794 2731808 ~ 2754752 (+)
CI01000049_02593696_02606225 NA coding upstream 478276 2593507 ~ 2606270 (+)
CI01000049_03121188_03131739 NA coding downstream 35051 3121188 ~ 3131911 (+)
CI01000049_03133436_03158345 DHRSX coding downstream 47160 3133297 ~ 3158677 (+)
CI01000049_03214802_03219475 CHMP2B.L, CHMP2BA, CHMP2BB, CHM2B, CHMP2B, CHMP2B.S coding downstream 128387 3214524 ~ 3219586 (+)
CI01000049_03247914_03248937 NA coding downstream 161777 3247914 ~ 3249051 (+)
CI01000049_03253972_03255119 HTR1FB, HTR1F coding downstream 167835 3253972 ~ 3255140 (+)
G206654 NA non-coding upstream 3103 3080980 ~ 3081443 (+)
G206723 NA non-coding upstream 22342 3061979 ~ 3062204 (+)
G206721 NA non-coding upstream 23816 3060442 ~ 3060730 (+)
G206696 NA non-coding upstream 91440 2932480 ~ 2993106 (+)
G206707 NA non-coding upstream 93168 2971429 ~ 2991378 (+)
G206659 NA non-coding downstream 17498 3103635 ~ 3105339 (+)
G206658 NA non-coding downstream 217663 3303800 ~ 3304088 (+)
G206787 NA non-coding downstream 227348 3313485 ~ 3313916 (+)
G206788 NA non-coding downstream 236593 3322730 ~ 3323199 (+)
G206789 NA non-coding downstream 237429 3323566 ~ 3323905 (+)
CI01000049_01840330_01843844 FGF8B other upstream 1240718 1839815 ~ 1844077 (+)
G207888 NA other downstream 537865 3624002 ~ 3624311 (+)
G208074 NA other downstream 791259 3877396 ~ 3882211 (+)
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 other downstream 1387388 4473662 ~ 4476270 (+)
G209660 NA other downstream 3791996 6878133 ~ 6882030 (+)
CI01000049_07219171_07224229 NA other downstream 4132711 7218811 ~ 7224268 (+)

Expression


Co-expression Network