CI01000051_04081532_04085798 (PSMC1B, PSMC1, PSMC1A, PSMC1.L)


Basic Information

Item Value
gene id CI01000051_04081532_04085798
gene name PSMC1B, PSMC1, PSMC1A, PSMC1.L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 4081532 ~ 4085922 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_04081532_04085798.mRNA
GACAAGAAGAAGAAATATGAGCCGCCCATTCCAACTAGAGTGGGCAGGAAGAAGAGGAAGTCCAAGGGCCCTGATGCTGCAAGCAAACTGCCTTTAGTCACCCCTCACACACAGTGCAGACTGAAGCTCCTGAAGCAGGAGAGAATTAAAGATTACCTGCTGATGGAAGAGGAGTTCATCAGAAACCAGGAGCAGATGAAACCGCTTGAGGAGAAACAGGAGGAGGAGAGGTCAAAGGTCGATGACCTCAGGGGGACACCAATGTCTGTGGGGACCCTGGAGGAGATCATTGATGACAATCATGCCATTGTCTCCACGTCTGTGGGCTCGGAGCATTATGTCAGCATTCTTTCGTTTGTTGACAAAGATCTGCTGGAGCCCGGCTGTTCCGTCTTGCTCAATCACAAGGTCCATGCTGTCATTGGGGTGCTGATGGACGACACGGACCCTCTTGTTACAGTCATGAAGGTGGAGAAGGCTCCGCAAGAAACATATGCGGACATCGGTGGACTGGATGCTCAGATACAAGAAATTAAGGCAAATAAAAATGAACCTGTGCTGCTTAACAAATGTTTTGGCTGTCACAATGATCTACAGGAGTCAGTGGAGCTGCCGCTGACCCATCCAGAGTATTATGAGGAAATGGGGATAAAGCCTCCCAAAGGGGTCATTCTCTACGGCGCCCCTGGAACAGGTAAAACCCTCCTCGCCAAAGCGGTGGCCAATCAGACGTCTGCAACATTTTTGCGTGTTGTTGGTTCAGAGCTGATTCAGAAGTATCTCGGCGACGGCCCTAAATTAGTGCGTGAGCTCTTCAGGGTGGCCGAGGAACACGCACCTTCTATCGTCTTCATTGATGAGATTGACGCCATTGGAACTAAGAGATACGACTCAAACTCAGGAGGTGAGCGTGAAATACAGAGAACCATGTTGGAACTGCTAAACCAGCTGGATGGCTTTGATTCACGTGGAGATGTGAAGGTCATTATGGCTACCAACAGAATAGAGACCCTTGACCCTGCTCTTATTCGACCGGGTCGCATCGACCGTAAGATTGAGTTCCCATTACCAGATGAGAAAACCAAAAGAAGGATCTTCCAGATTCACACCAGCAGAATGACCGTGGCCGAGGATGTGAACTTGGACGACCTCATTCTGGCTAAAGATGACCTTTCAGGAGCCGATATTAAGGCCATCTGTACAGAAGCAGGGCTCATGGCCCTCAGAGAACGCAGGATGAAGGTCACCAACGAGGACTTCAAGAAGTCTAAAGAAAATGTTTTGTATAAGAAGCAGGAGGGCACCCCAGAAGGCCTCTATCTCTAATCTTCCTCCAATTTTCATTTCTATGTAAATATATGATTGTGACGCTCCCTCTCAAGTACGCATTTAGCTAAAATATACGCATGTTTTTGTCTGCCAATTTGTTTTTTATTCATGTGAGCAGAAA

Function

symbol description
psmc1a Predicted to enable TBP-class protein binding activity and proteasome-activating activity. Predicted to act upstream of or within protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of proteasome regulatory particle, base subcomplex. Orthologous to human PSMC1 (proteasome 26S subunit, ATPase 1).
psmc1b Predicted to enable ATP binding activity; hydrolase activity; and proteasome-activating activity. Predicted to act upstream of or within protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of proteasome complex. Orthologous to human PSMC1 (proteasome 26S subunit, ATPase 1).
psmc1 Enables RNA binding activity. Predicted to be involved in negative regulation of neuron death; positive regulation of proteasomal protein catabolic process; and protein catabolic process. Located in cytosol and nucleoplasm. Part of proteasome complex.

GO:

id name namespace
GO:0036402 proteasome-activating ATPase activity molecular_function

KEGG:

id description
K03062 PSMC1, RPT2; 26S proteasome regulatory subunit T2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_04081532_04085798.mRNA True 1450 mRNA 0.48 9 4081532 4085922

Neighbor

gene id symbol gene type direction distance location
CI01000051_04071144_04075444 KCNK13B coding upstream 4407 4070951 ~ 4077125 (+)
CI01000051_04038453_04045552 TMEM30A, TMEM30AA, TMEM30AB coding upstream 35004 4038407 ~ 4046528 (+)
CI01000051_03800655_03819155 ZYG11B, ZYG11 coding upstream 262335 3800655 ~ 3819197 (+)
CI01000051_03687377_03698806 ANGPTL1A, ANGPTL1 coding upstream 382569 3687324 ~ 3698963 (+)
CI01000051_03679568_03682342 NA coding upstream 399004 3679437 ~ 3682528 (+)
CI01000051_04094412_04101387 CALM2, CALM3, CALM1 coding downstream 8432 4094354 ~ 4101516 (+)
CI01000051_04155754_04157992 NFKBIAA coding downstream 69762 4155684 ~ 4158329 (+)
CI01000051_04374052_04393328 NA coding downstream 286736 4372658 ~ 4393677 (+)
CI01000051_04419475_04464134 NA coding downstream 333348 4419270 ~ 4464166 (+)
CI01000051_04763063_04778692 NA coding downstream 676574 4762496 ~ 4779082 (+)
G219452 NA non-coding upstream 16679 4064401 ~ 4064853 (+)
G219451 NA non-coding upstream 18079 4063254 ~ 4063453 (+)
G219440 NA non-coding upstream 25091 4056199 ~ 4056441 (+)
G219439 NA non-coding upstream 25566 4055112 ~ 4055966 (+)
G219468 NA non-coding downstream 36626 4122548 ~ 4122937 (+)
G219481 NA non-coding downstream 65541 4151463 ~ 4151765 (+)
G219484 NA non-coding downstream 68520 4154442 ~ 4154766 (+)
G219497 NA non-coding downstream 110605 4196527 ~ 4197145 (+)
G219534 NA non-coding downstream 150774 4236696 ~ 4237117 (+)
G218981 NA other upstream 834659 3245443 ~ 3246873 (+)
CI01000051_02060996_02061735 NA other upstream 2015449 2060534 ~ 2062355 (+)
CI01000051_00638200_00720543 CDC42BPB other upstream 3356828 637590 ~ 720669 (+)
G217075 NA other upstream 3697404 324465 ~ 384128 (+)
G219803 NA other downstream 829052 4914974 ~ 5052033 (+)
CI01000051_06825895_06830637 NA other downstream 2739877 6825895 ~ 6830637 (+)
G221319 NA other downstream 3256119 7342041 ~ 7342546 (+)
G221386 NA other downstream 3323601 7401175 ~ 7413007 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017230 psmc1b coding NC_007131.7 CM002904.2 16721933 ~ 16740957 (+)
rainbow trout (Oncorhynchus mykiss) G218295 NA non-coding NC_048567.1 CM023221.2 5359700 ~ 5410101 (+)
eurasian perch (Perca fluviatilis) G183711 psmc1,psmc1b non-coding NC_053129.1 CM020926.1 11647337 ~ 11650005 (+)