G183711 (psmc1,psmc1b)


Basic Information

Item Value
gene id G183711
gene name psmc1,psmc1b
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 11647337 ~ 11650005 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU248777
TGCCAGGCGCTCCATATAAGATGACACCTTTGGGAGGCTTTATTCCCATCTCCTCATAATACTCTGGATGCGTGAGAGGCAGCTCCACCGACTCCTTGATTTCCTGGATCTGATTGTCCAGTCCTCCGATGTCAGCGTAGGTTTCTTGTGGGGCCTTCTCCACCTTCATCACCGTCACCAGGGGATCAGTGTCATCCATCAGCACGCCAATCACTGCATGAACCTTGTGGTTGAGCAGGACAGAGCAGCCTGGCTCAAGCAGATCCTTATCCACAAAGGACAGTATGCTGACGTAGTGCTCTGATCCCACTGAGGTGGAAACGATGGCGTGGTTGTCATCGATGATTTCTTCCAGAGTGCCCACGGACATAGGGGTCCCCCGCAGGTCGTCCACCTTTGACCTCTcctcCTCCTGTTTCTCTTCCAGAGGCTTCATCTGCTCCTGGTTTCTGATGAACTCCTCCTCCATCAACAGGTAGTCTTTGATCCGCTCCTGCTTCAGCAGCTTTAGACGGCATTGAGTGTGAGGGGTCaCTAATGGTAGTTTACTGGCAGCATCTGGTCCCTTggtcttcttctttctcttgcCAACTCTGGTGGGAATTGGAGGCTCATACTTCTTTTTCTTATCCTTGTCATCCTTCTTGCCTCCCCCCGGACCGTGGCCTCCACTCTGGCTTTGACCCATTGTTACTTGTCGCTTTCCA

Function

symbol description
psmc1b Predicted to enable ATP binding activity; hydrolase activity; and proteasome-activating activity. Predicted to act upstream of or within protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of proteasome complex. Orthologous to human PSMC1 (proteasome 26S subunit, ATPase 1).
psmc1 Enables RNA binding activity. Predicted to be involved in negative regulation of neuron death; positive regulation of proteasomal protein catabolic process; and protein catabolic process. Located in cytosol and nucleoplasm. Part of proteasome complex.

NR:

description
PREDICTED: 26S protease regulatory subunit 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248777 True 707 lncRNA 0.52 7 11647337 11650005

Neighbor

gene id symbol gene type direction distance location
LOC120547096 brms1l,LOC103358934,LOC100691440,LOC101472597,LOC102200527,LOC103380712 coding upstream 56791 11578169 ~ 11590546 (+)
LOC120547310 psma6,LOC103358936,LOC105930638,LOC102217550,LOC103457804,LOC107095481,LOC106935624 coding upstream 103359 11536311 ~ 11543978 (+)
LOC120547014 LOC103358937 coding upstream 137958 11499969 ~ 11509379 (+)
flrt2 LOC104961132,LOC103360508 coding upstream 440970 11032427 ~ 11206367 (+)
LOC120547319 NA coding upstream 872354 10770950 ~ 10774983 (+)
gtf2a1 gtf2a1 coding downstream 222971 11872976 ~ 11886364 (+)
LOC120546813 cep128 coding downstream 239991 11889996 ~ 12003884 (+)
snw1 snw1,LOC102781075 coding downstream 863595 12513600 ~ 12526139 (+)
sptlc2b sptlc2,LOC103357434,LOC100704591 coding downstream 890590 12540595 ~ 12559204 (+)
ism2b ism2,LOC104967641 coding downstream 910293 12560298 ~ 12574350 (+)
G183709 psmc1a,psmc1 non-coding upstream 2492 11638856 ~ 11644845 (+)
G183700 calm1,LOC107396020,LOC102778633,LOC102293206,LOC103380713 non-coding upstream 12933 11568285 ~ 11634404 (+)
G183696 NA non-coding upstream 89544 11557524 ~ 11557793 (+)
G183687 LOC104952422,LOC104931204 non-coding upstream 98997 11545864 ~ 11548340 (+)
G183655 NA non-coding upstream 199929 11447171 ~ 11447408 (+)
G183735 NA non-coding downstream 9667 11659672 ~ 11659891 (+)
G183762 NA non-coding downstream 236590 11886595 ~ 11887137 (+)
G183825 NA non-coding downstream 524574 12174579 ~ 12178850 (+)
G183866 NA non-coding downstream 830302 12480307 ~ 12480529 (+)
G183868 NA non-coding downstream 854680 12504685 ~ 12505123 (+)
G183540 sf3b6,pm14,SF3B6 other upstream 980865 10622736 ~ 10666472 (+)
cdc42bpab fzd3,LOC103374788 other upstream 1247525 10236949 ~ 10399812 (+)
LOC120546402 NA other upstream 1534702 10111070 ~ 10112635 (+)
il17a/f3 NA other upstream 2044989 9595376 ~ 9602348 (+)
pnocb LOC103362991 other upstream 2143063 9469609 ~ 9504274 (+)
ches1 foxn3 other downstream 114138 11764143 ~ 11869192 (+)
bcl11bb LOC103368061 other downstream 1057213 12707218 ~ 12739384 (+)
LOC120546167 NA other downstream 1296994 12946999 ~ 13008411 (+)
G183994 phip other downstream 1495470 13145475 ~ 13247416 (+)
LOC120546706 wdcp other downstream 1818230 13468235 ~ 13474159 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000051_04081532_04085798 PSMC1B, PSMC1, PSMC1A, PSMC1.L coding CI01000051 null 4081532 ~ 4085922 (+)