CI01000051_06948569_06952962


Basic Information

Item Value
gene id CI01000051_06948569_06952962
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 6948569 ~ 6954096 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_06948569_06952962.mRNA
GTGGAGTGGGATAGTTTTTTGAAACGTCTGGATGTTCAGATGCAAATGAGCGACACAACTCTTTCCCAGTGTCCTGCAGCCCAGACGCTCAGCTCGGATACACGGTTTATACACGTCCAAACTAAAGAGAATGTGTCTCTGAGTCAGTACTTGGGCAAGGGAGAGAATCTCCTCCTTAAGCTTCTGGAAGCTCGGTCATTGCGGGTGCTGGTGGTCTCATATGGTTCTCTTGAAGGGGCAACGTTCTGGCTTGGTCAGACAGGCTATGAATTTGACATGCTGTTGGATGCAGAGAGAGTGGTGTATCAAGCTTTCGGTCTGGGTTCATCCATCAGCAAGGTGATGAAGTTTAAGTTAATGCTCCACTACTCTGGAATTCTGGTGATGAACCGACAGTTACCCGATGTGCCACCTCAGTTCATCGATGATCTATTTCAGATGGGAGGTGATTTTGTGCTGGACCAGGGTGGTAAAGTGATATTTTCCTACCGGTGTAAAAGCCCTGTGGACAGACCATCGGCTACACAGATTCTGGCTTCCGTCTCTGCTCATTCTTAGCATTCTTAAGTCCTGGAGAAAAAGAGCTTTCAGGTTTGGTCTTTCTGGTACTTTGAACTGCTTTACTTGCTTCCTTGCCATCCTCATAAGTAGTTCCAGTTCCTGAAAAGTTATACTCATTCATGTTCATGCCAGGCTTTAAAAAGAGATTTAGACATTTAGACGATGACCAGAATAATTCTGTAATATTAACCATTCCAAACCCTTGGTTCTTTTACAAAGCAAAGTCTGCCCTAAATCATTTCACTTATCTGTAAAATGTAAAATTGGGAAGCTGCTGTTTTACTATGAGACTCACACAAGGGGAAAATGAAACAAATATGATTTCAGAGTATAACTTCATTAACTCCATTAATATATAGTGTAGTAAATTCCCGCTAACAAAAATATGTTCTTAGAACGTTCTGCTAATGTTCCCATTAAGTTATGAAAACGTTATTTGAAATATGTTAAAAAAAAAAGCTTTTTTCTTGGTTATATGAATGTTACGAGAACATTCCATTTTAACATTCTTCAAACATTATGGGAATGTTACTTTTGAATGTTCTCTGAATGTTCTGAAGCAAGTAGCAGCATTTAAGAAATGTTAAATGAACGTCCAACTAAAAATTTCATGAAAAAGTTCCATGAATGATGTGTAAATTATGTTTTTGTGCTAACGTTTTGAAAACATTATTAAAGACCAGATAACTCTGACCAAACATTCTATTTAAGTTACCGGAAGAATGTTTGTTCATAACTTTGAGAGAACCTTGGCAGAACGTTCTCTGTTAGCTAGGCTGTCACTGACTTCAGGCCTTATATGTGTTACTATAGGTTGGCTCCACAGATAGACAGCTCCCCCAGAGGTTGTATGGATGAAGATCTGACTCAAACTCATACACTTATGAAGAGTCGTCTCTGATGGATATTTACACCCTCTGGTCATCTCAGCTTCTCGTCTGTTGAGTTAGCACCTAAATAACACATTAACTACTGTCTTGATTAAAAAAAATCAGATTATTAACTTTATTATACAAGTCATATGAAATGAAATAATCTTAAGTTGTTGAACTACTATTTACTGTGAAGGGTAAATGTATAAATATAACTGATTTATATAGGTTGGAATTTGATAATTGAAGTCCACATTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_06948569_06952962.mRNA True 1692 mRNA 0.38 5 6948569 6954096

Neighbor

gene id symbol gene type direction distance location
CI01000051_06917282_06944243 TTC13 coding upstream 4302 6917282 ~ 6944267 (+)
CI01000051_06898228_06901582 FAM89A coding upstream 46949 6898228 ~ 6901620 (+)
CI01000051_06887510_06888144 NA coding upstream 60390 6887158 ~ 6888179 (+)
CI01000051_06825895_06830637 NA coding upstream 117932 6825895 ~ 6830637 (+)
CI01000051_06655818_06730954 NA coding upstream 217531 6655818 ~ 6731285 (+)
CI01000051_06970612_06971675 NA coding downstream 16326 6970422 ~ 6971842 (+)
CI01000051_06985393_07011299 CNKSR3 coding downstream 29258 6983354 ~ 7011403 (+)
CI01000051_07015896_07020569 NA coding downstream 61287 7015383 ~ 7020614 (+)
CI01000051_07081085_07109551 TIAM2 coding downstream 126989 7081085 ~ 7109606 (+)
CI01000051_07125875_07127476 CLDN20 coding downstream 171779 7125875 ~ 7127847 (+)
G221254 NA non-coding upstream 674 6947384 ~ 6947895 (+)
G221208 NA non-coding upstream 36858 6847641 ~ 6911711 (+)
G221188 NA non-coding upstream 151963 6794991 ~ 6796606 (+)
G221194 NA non-coding upstream 154633 6785486 ~ 6793936 (+)
G221256 NA non-coding downstream 89567 7043663 ~ 7152095 (+)
G221280 NA non-coding downstream 207070 7161166 ~ 7161367 (+)
G221283 NA non-coding downstream 253275 7207371 ~ 7207573 (+)
CI01000051_07215332_07217167 NA non-coding downstream 261267 7215332 ~ 7217708 (+)
G221351 NA non-coding downstream 268621 7222717 ~ 7222987 (+)
G219803 NA other upstream 1896536 4914974 ~ 5052033 (+)
CI01000051_04374052_04393328 NA other upstream 2573239 4372658 ~ 4393677 (+)
G218981 NA other upstream 3701696 3245443 ~ 3246873 (+)
CI01000051_02060996_02061735 NA other upstream 4882486 2060534 ~ 2062355 (+)
G221319 NA other downstream 387945 7342041 ~ 7342546 (+)
G221386 NA other downstream 455427 7401175 ~ 7413007 (+)
CI01000051_08211233_08214513 NA other downstream 1151547 8209722 ~ 8214696 (+)
G222727 NA other downstream 1388846 8342942 ~ 8343448 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017860 NA non-coding NC_007131.7 CM002904.2 3942667 ~ 3953631 (-)
tiger barb (Puntius tetrazona) selenol sell,LOC107679675,LOC107558766,LOC107742218,LOC107742854 misc NC_056718.1 CM032087.1 5024806 ~ 5029567 (-)