XLOC_017860


Basic Information

Item Value
gene id XLOC_017860
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 3942667 ~ 3953631 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035267
aTGGCTGAAGTAGACGAAAGCACACTCGTAGGCGCTCTAAAAGAACTCACTATATTTGGTAGAACATCGCTGGAATATGTGGAGAAAGACACTGCGAATGGATGTACTTTACAAGAAGTTAATGGGAAAGTTCTTCCTTTACTTGGCCTGATGTCAGCAGGGGCAAAGTTCTGTAACAGTCTGGGTGTGAAAAACCAGAAGGAGGCAGAAAGTTTATGGGAACGCTTCTTTCAAAATACAGAGGTCCGAGAAAGTGTTGAAGGTTTACTGCAGTTGGAAGTGGAGTGGGACCGTTTTTTGAAACGTTTGGATGTTCAGATGCAAATGAGCGACACGGTTCTTTCCCAGCATCCTGCAGCTCAGACGCTCAGCTCAGATATGCGCTTTTTACACGTCCAAACCAAAGAGAATGTGTCTCTGGGTCAGTATTTAGGGAAAGGGGAGAATCTCCTGCTTGTGCTGCTCAGGCATTTCGGATGATTGCCATGACGGGACCACCTGACTGAGCTGAAGAACAGCAAGATGCTTCTGGAAGCTCAGTCACTGCGGGTGCTGGTGGTCTCGTATGGCTCTCTTGAAGGGGCCACTTTCTGGCTCGAGCAGACAGGCTTTGAATTTGACATGTTGCTGGATACAGAGAGAACGGTGTACAAAATGTTCGGTCTGGGTTCATCCATGAGCAAAGTCATGAAGTTTAAGCTGATGTTCCACTACTCTGAGATTATGGCCATGAACCGGACGTTACCCGAAATGCCGCCTCAGTTCATCGAGGATCTTTTTCAGaTGGGTGGCGATTTTGTGCTGGAGCAGGATGGTAAAGTGATATTTTCCTACCGGTGTAAAAGCCCTGTGGACAGACCATCCGCTACTCAGATTCTGGCCACCGTCTCTGCTCACTATGCGCATTAATAAGTTCTGGAGAAAAGAAAAAGGACTTCCCATGCTTTTCTTGCTTGCTTGCCATTAAGATAAGAAGGTCCATTTCCTGAAAACTTATATTCATTcgtgttttcttttatttactaTGCTACATAGATGGCCAAAATAAAGTAGAGATTCCAGACGCTCAAATTGAAGTGGAATAGTACTCCAATACaaattttttacaaataacacttcagaataatggtccattacttaatattagttaatgcagttAACTAATCATGagtaatcttgtaaagcattaatTAAACAAAGTATAGTTCTATGTTTACCAATGCATCATTAAAATCCAAAGCGTTGCTTGTTAATGTTACAGTCCACGGATCCTTAAAGTCTTGAATCCACATTTCAGAGGTCTTAAAAATGCAATTGAACCAAATGATTTTTacatttcccaaaagatgtttaacagagcaaggaaattttcacagtatgtctgataatattttttcttctggagaaagtcttatttgttttatttcggctaaaataaaagcagttcttaatttcttaaacactattttaaggtcaaaa

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0043010 camera-type eye development biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007601 visual perception biological_process
GO:0048880 sensory system development biological_process
GO:0001654 eye development biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0043005 neuron projection cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0044295 axonal growth cone cellular_component
GO:0044297 cell body cellular_component
GO:0061134 peptidase regulator activity molecular_function
GO:0030414 peptidase inhibitor activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0004857 enzyme inhibitor activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035267 True 1479 lncRNA 0.41 9 3942667 3953631

Neighbor

gene id symbol gene type direction distance location
XLOC_017859 NA coding downstream 26897 3913424 ~ 3915770 (-)
XLOC_017858 cnksr3 coding downstream 31121 3828237 ~ 3911546 (-)
XLOC_017857 NA coding downstream 215741 3721325 ~ 3726926 (-)
XLOC_017856 NA coding downstream 518013 3421578 ~ 3424654 (-)
XLOC_017855 rev3l coding downstream 539634 3346242 ~ 3403033 (-)
XLOC_017861 ttc13 coding upstream 948 3954579 ~ 3997531 (-)
XLOC_017862 fam89a coding upstream 72777 4026408 ~ 4031475 (-)
XLOC_017863 sprtn coding upstream 79562 4033193 ~ 4049862 (-)
XLOC_017864 CABZ01042336.1 coding upstream 172509 4126140 ~ 4126254 (-)
XLOC_017865 NA coding upstream 181903 4135534 ~ 4146132 (-)
XLOC_017928 CU539064.1 misc upstream 6099774 10053405 ~ 10053701 (-)
XLOC_017854 CU570797.9 non-coding downstream 607909 3334542 ~ 3334758 (-)
XLOC_017853 CU570797.11 non-coding downstream 608876 3333576 ~ 3333791 (-)
XLOC_017867 NA non-coding upstream 428298 4381929 ~ 4386307 (-)
XLOC_017869 NA non-coding upstream 541510 4495141 ~ 4496142 (-)
XLOC_017875 BX649499.1 non-coding upstream 952447 4906078 ~ 4907477 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000051_06948569_06952962 NA coding CI01000051 null 6948569 ~ 6954096 (+)