XLOC_017856


Basic Information

Item Value
gene id XLOC_017856
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 3421578 ~ 3424654 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036788
CAAAAAGAATATTCAGCATTGAGTAGCATCAgggtatacaaatataaaaacatgtacATCAACAAATCCAGTTTATATTTCTAGATTAAAACAGGAATCAAATAACAGCTTGTGGATGGTCAGTGTGATAACAAAGAGTATTTTGTAGGCTCAGGTCAAAGGGTTGATAAAGGGTCCATAAGGTTTCTAAAAATacgtgttttttgttttttaagctaTATGTTAAATATTACACATGCAGCGTGTCATttatgatatttttaaataaatccccAAACGACAGGGCAGCCCCATCACCGAACTAACCCTGGGCATATAATAACCAGTAAGAGTGCTCAAACCCGAACACACAAATCTACAAAAAAGGCTTGTCATCTCAAAGACTTACAGTACTAgacATTATAGGAATATAATACTTAATTAGCAGAAATATTTCCTCAAAAATCTGAgatatattttacatgtttttcgagacggaatattttatttgtaattattagcATTTGTCGGTTTTAACAAGACATTTACACCCCAAATCGCTTATTCATTTTAGTCCGATCCATATAGTATTACTCACGACTGTCTAGCCAATTTAACTCTAGAACTCCTCAGCGTCTTCGAGAGATGAGAACAGGTGGATCTTTTTGTCATGAAGAATTCTATCCTGGTTGGATAAGGAATCCACGGTACATCCCTTTCTCAGCAAACAGTTTTCTGGCGTTGTTGCATAGTTTCCACTGAAAAACGGTCAGAAAAGTACAGCCTGCTTCCATCGTAGGTGATTTCTCTGCGTCTTGTTGAGCGTAATATAAGTTCCTTATCCTAAAATTTAAGGAAGCGGATGACAACGGCCTTGTGTTGGTCAGGTTTAGCTGGAGCTAAAGTCCTGTGGACCCGCTCCAGGGTGAACTGTGTGTCAGGTGTCATGTTCAACCACTGAGACAGCATGATAAAGTCCATGAACGGTTTTGATGCTTCTGCATCCTCTGATAAACCAAAGAGTCGAAGATTCTTTCTCCTGCTGCAGTTTTCTAAATCTTCCACCTTTGCTTCCAGAAGATTCAGGCATTTAGATGCCGAGGTAGTGGAAGAGTCGACTGTATCCAGTCGGCTTTTAGCTGCCACAACGCGCATCTTAACATAACATCTAACATCTTAACAGATGAAGATACTTCTGTTAATCAATTTTCAATACCATCCAGTTTGGTTCCAAGCTCAGTTCTCAGTGCTTTTAATTCTGCCAACACGTCTGATGTATCCGCCTTGACAGCCAGATCAAGATCGACCTGAGGTTTCTGTTTTTCCCCTCCTGTTCTACGAGCTcaggtaaaaatgtaaaaatgtcacACTGTTTTGGAGCAAGATGTTTGGACATACTCAGATTGTTAATTCCGATCGGAGTTAGTTAAATTTACAAGGGTGTTATAGATTTTGTCGGAGAGAATCAATCAACCAGCCATCCTCGCCAGAGCCACGTGACCTCCccatgacatgtttttttttttttcttttacttacaAGACTGATAAAATCACAGGCAGAAATCTAATCATGCAACCATCTATATTGTAAATGAAACTGTAAAAGTATCATATAGTAAACTACTAACTTATCTACATTTCTCAATCAGAAATCCCGTAAAATGTAGTTGTCACAATGATCTCCAGTCGGGTTTAAGACTGAAACTgcattaaagttaaaaatgacTTGCTCTTATTATCTGACTATACTGTGCATCTACATCAGTATTGCTGGATCTTCATGCAGGTTATGGTGAAATATGCAGATTATTTGTTATAGGGGCTTGATAGTGAGCGTCAGCTCTTTGCCCAGTGGAGGGACAATGTATTTCTCTTCTCTAAGCAAACGCAGTAATAGGTCCTTTGAATCTTCCGGCCATCGGTACAGACGAGTGCTCTGCAGCCACAGAGGAACGTGAGTCTGCAAGAAAAGTAGAGTGAAGTCAGCTCAAATAGGTTAAAACAGGACAAGTTTGTAGCATCATCTCCTATTTTGAAGGAAATATCAATAAAGGATTTTGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036788 True 2042 lncRNA 0.39 2 3421578 3424654

Neighbor

gene id symbol gene type direction distance location
XLOC_017855 rev3l coding downstream 18545 3346242 ~ 3403033 (-)
XLOC_017854 CU570797.9 coding downstream 86820 3334542 ~ 3334758 (-)
XLOC_017853 CU570797.11 coding downstream 87787 3333576 ~ 3333791 (-)
XLOC_017852 CU570797.1 coding downstream 88752 3332611 ~ 3332826 (-)
XLOC_017851 NA coding downstream 89907 3331457 ~ 3331671 (-)
XLOC_017857 NA coding upstream 296671 3721325 ~ 3726926 (-)
XLOC_017858 cnksr3 coding upstream 403583 3828237 ~ 3911546 (-)
XLOC_017859 NA coding upstream 488770 3913424 ~ 3915770 (-)
XLOC_017860 NA coding upstream 518013 3942667 ~ 3953631 (-)
XLOC_017861 ttc13 coding upstream 529925 3954579 ~ 3997531 (-)
XLOC_017928 CU539064.1 misc upstream 6628751 10053405 ~ 10053701 (-)
XLOC_017850 CU570797.10 non-coding downstream 90887 3330476 ~ 3330691 (-)
XLOC_017864 CABZ01042336.1 non-coding upstream 701486 4126140 ~ 4126254 (-)
XLOC_017865 NA non-coding upstream 710880 4135534 ~ 4146132 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location