G217417


Basic Information

Item Value
gene id G217417
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 216869 ~ 218155 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU246658
TTGCAGTTCCACCAGTCTGTGCCATCCATCAACATCATCGAGGTGTGATGGGAGTTTCGTAGACGTCCGTCGCACCACCCGCATATCAGGACGACAGTTTATCGGCCCTTCCATCATAACGCAGTGAAGAATCCTCACATCTACAGCTACACCGCAGCATCGGCCCACCCATACACACATCATATACTAAAGCAATCTACTGGGACTGTAAATAACATTGTGATATTGTATGATGGATGGATGGAGAATTCCCAAAACTTTCCTGCAATATATCAGATTAAATCTGGGATTTTTTCTCTTGTATAGACAAGGAAGGAAAGTGTATTTTTAATATGGTACTGGTGAAGTATGACAGGGTTTCTACTCTTTATTAGCTAGTTTAGTTTGTGCATGCGTCTCTCGCGGTCTGATAGGACGTGTACAGAAGCAGGTCATTAGATTAAGCTTGTGCTCTTACTTTCATTAGTCTGTAAAACTGCTGGAATTGTGACTGAGCTGCTGCTTATTAGAGAGAACAGACTGGAGCCAAATCTCTCTGCTTGTACATAGTTTCATAACAGTTTATTTTTTCGTATCCTAAATATGGCTAGACCTCTGGTGTTGTTCGGTCATTTTAGACCGAAAATGTTTGGAAATTTTAAAAATCGCTGCTTCATTGGAATGGTACGAAACTCTGTGACTTTTATGGCAGTCGCTACATGTGACAACAAAGCAAGTTTTTAACAAATGCATGAAATAAAATCAATAATTAAGCCACAATGCAGTAAAAAATGGACTGCAAACTCTCTAAAACATCGAGAGTACAAATTGAAAACACACACTCACACACACTATCATTCACACACAAATGAACTGCTGTGGCTGTAACAATATGGCAAAATTGAGCCAGAAGACTCAAATAAGAGGTTGAATTCAGGTTGATATAGCTCTGATAAAGCATTCTTGTTCATTTTTTATTCCATTTTTGTTGAATTTTGATGTTATGTGTAACAAAATGTCTTTCTCTGTGTTCAGGTTTGACTGTAGTAAAAAATGAATGTAAAAACTGACACTTCGAATCAACATTTAAAAAAAAAAATCTAAACCTTGACAAAAAATTGTCTTTGAGAATGTCTAAATACATATCCAAATCCACAACTTAATAAAGTAAGTAAAGTATTTATGTCTAAAAACAACTAGAATTTTTAAGCCTTTTTATATAGAGCTGTACAGGCATCTGGTTACACCACATTACAGATGTTTTTCTTTCTTTTACTCCCACCAGATGGCACTAATCTACCTTCAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU246658 True 1287 lncRNA 0.37 1 216869 218155

Neighbor

gene id symbol gene type direction distance location
CI01000051_00131867_00138611 ZNF513 coding downstream 78079 130386 ~ 138790 (-)
CI01000051_00083434_00086769 NA coding downstream 129510 82720 ~ 87359 (-)
CI01000051_00036318_00057051 SCARA5 coding downstream 159818 36318 ~ 57051 (-)
CI01000051_00000977_00002147 NA coding downstream 214330 810 ~ 2539 (-)
CI01000051_00224709_00227613 NA coding upstream 6352 224507 ~ 227613 (-)
CI01000051_00262483_00263385 BLK coding upstream 44286 262441 ~ 263385 (-)
CI01000051_00278614_00302552 NA coding upstream 60037 278192 ~ 304373 (-)
CI01000051_00334616_00337009 SOX7 coding upstream 115898 334053 ~ 337197 (-)
CI01000051_00346827_00352024 NA coding upstream 128672 346827 ~ 352381 (-)
G217420 NA non-coding downstream 102 215484 ~ 216767 (-)
G217419 NA non-coding downstream 1745 214080 ~ 215124 (-)
G217424 NA non-coding downstream 3017 213614 ~ 213852 (-)
G217423 NA non-coding downstream 3499 211892 ~ 213370 (-)
G217489 NA non-coding downstream 9575 206849 ~ 207294 (-)
G217553 NA non-coding upstream 79895 298050 ~ 298268 (-)
CI01000051_00394082_00407612 MTMR9 non-coding upstream 174565 392720 ~ 407612 (-)
G217532 NA non-coding upstream 178863 397018 ~ 397424 (-)
G217531 NA non-coding upstream 195691 413846 ~ 414972 (-)
G217573 NA non-coding upstream 209869 428024 ~ 428243 (-)
CI01000051_00560810_00563417 NA other upstream 344041 560768 ~ 563417 (-)
CI01000051_01785489_01787612 IGFBP1A other upstream 1491143 1784416 ~ 1787760 (-)

Expression


Co-expression Network