G218930


Basic Information

Item Value
gene id G218930
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 2973148 ~ 2974068 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU248305
GCTGGGGTAGTGGTTGCTCATGGGAATGGCTGGGCTAGTATTGTGATTGGGCGAGCTCCTGCAGCACTGCATACAGACCAGCAAACCCAGCGTTAGACACAGGATCAGAGAAAGCACCAAGTAACTCTGTCTGTCGGACACCTCTCGCTGTAACTGTGCAACAGTGGCAGACAGGTTCAGCATGATCTTGGTGGCATTCTCCAGCTGGCTCTGCAACATCTGTATAGACTCTGTCTGTTTCTGGTCCTAAACACACACAGATGCAAACGGTTATCCACATGTTATACGTGTAAAAAAAACACTGTACATGCTACAATGGTATCTGAACAAGTAAGTCACACTTAAAGGATTAGTTCACCCAAAAATGTAAATTCTGTCACTAATTACTCACCCTCATGTCCTTCCGAACCCATAAGACCTTCGTTCATCTTCAACAAAAGGTATTCTCGTCGCTTAATAAAATTAAGGTTGAACCACTGTAGTCACATTGACAATTTTAACGTTATCTTTAGTACCTTTCTAGGCCTTGAAAGTGGTAATTAAATTGCTGTCTATGGAGGAGTCAGAGCTCTCGGATTTCATCAAAAATATCTTCATTTGTGTTCTGAAGATGAACGAAGGTCTTACGGGTGTGGAACGACATCAGGGTGAGTAATTAATAACAGAATTTTCATTTTTGGGTGAACTAGCCCTTTAAAAATGTATCAGTGCCATTTAACTAGGTGAAAAATATTAAACTGAGTGGCATTGTGAAACAAATGGCTTCCCTTTCTGAGCCAGAAAGTGTCATAAATGTTTTGTTTTAATTTGAAAGAG

Function

NR:

description
vimentin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248305 True 816 lncRNA 0.41 2 2973148 2974068

Neighbor

gene id symbol gene type direction distance location
CI01000051_02332216_02342649 PRKAA2 coding upstream 629935 2332216 ~ 2345195 (+)
CI01000051_02285060_02291993 NA coding upstream 680875 2284139 ~ 2292273 (+)
CI01000051_02280290_02283028 NA coding upstream 689780 2280290 ~ 2283368 (+)
CI01000051_02060996_02061735 NA coding upstream 910793 2060534 ~ 2062355 (+)
CI01000051_01976321_01985259 PCSK9 coding upstream 986989 1976080 ~ 1986159 (+)
CI01000051_03014282_03014572 NA coding downstream 39609 3013677 ~ 3014761 (+)
CI01000051_03022303_03035625 TMED5 coding downstream 47426 3021494 ~ 3035855 (+)
CI01000051_03038457_03041581 PIGC coding downstream 62784 3036852 ~ 3042733 (+)
CI01000051_03107566_03109607 ITPA coding downstream 133498 3107566 ~ 3109730 (+)
CI01000051_03128080_03133290 NA coding downstream 154012 3128080 ~ 3133321 (+)
G218927 NA non-coding upstream 10621 2962196 ~ 2962527 (+)
G218926 NA non-coding upstream 11663 2959355 ~ 2961485 (+)
G218889 NA non-coding upstream 64391 2908505 ~ 2908757 (+)
G218886 NA non-coding upstream 69845 2903008 ~ 2903303 (+)
G218884 NA non-coding upstream 81030 2891883 ~ 2892118 (+)
G218891 NA non-coding downstream 65535 3039603 ~ 3040918 (+)
G218984 NA non-coding downstream 70728 3044796 ~ 3045078 (+)
G218986 NA non-coding downstream 74568 3048636 ~ 3049404 (+)
G218987 NA non-coding downstream 76151 3050219 ~ 3050445 (+)
G218988 NA non-coding downstream 76614 3050682 ~ 3050884 (+)
CI01000051_00638200_00720543 CDC42BPB other upstream 2248444 637590 ~ 720669 (+)
G217075 NA other upstream 2589020 324465 ~ 384128 (+)
G218981 NA other downstream 271375 3245443 ~ 3246873 (+)
CI01000051_04374052_04393328 NA other downstream 1400342 4372658 ~ 4393677 (+)
G219803 NA other downstream 1940906 4914974 ~ 5052033 (+)
CI01000051_06825895_06830637 NA other downstream 3851731 6825895 ~ 6830637 (+)
G221319 NA other downstream 4367973 7342041 ~ 7342546 (+)

Expression


Co-expression Network