G218926


Basic Information

Item Value
gene id G218926
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 2959355 ~ 2961485 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU248296
GTTATTCTGATATTTAACAATAATTAATGTCATTTAACACAATAATGACTTTAAATTATCTAATGGGGGTAATTTCTCAGCCAAAATTGATTTAATTACAATTAATTTGGCACAAAATGCAATTAATTGAATTAAACATTTTAATTGCTTAACAGCCCTATCCATCTATCTATCTATTTATTTATTTTACATAATATCATTATGTAAATGAATCTGATCCACTGCATTGATCCTGCAGGCTCCGCCCTGACCGTGCTGCTCCAGCAGACCTGTGATCACATTCAGAGCGGCCCATGCACTGTCCCCACGCTCCAGACCCAGCCGAACCAGGTCCATTCCCAGCAGAGCTTCTTCTGAATTCACAGGCTCCTTGGTCCAGACTGCCTCGTTCCCAATACACACCCCGTGTTCATTCGCCCCCATCTCAGCCCCCCAGAGCCAGGCCGGTCTGCTCAGCACAACTGCATGAGTGTGCTCTACTTGAGGGATAGAAATGTATGTGCACTCCACTGTAGAGCCAGCAGCGTGTGATGACGCAGGGTAATACACCACCTCCTGCACCTCATCTCTCGGCCGGTCAGAGTTCTTACCAAAGATCACATAATCTTCTTTTGAACCCGGAGGCAGAGATACAAAACAGTCACATGACCGAGGCGGTTCAGCCATCCTTAATAAGCTCCAGATCGGTCAGAGAGCCTGTGAGAGGCAGGGCTGAGGCGGATCAACCTGCTGCGGCACACGCTTCAAAAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU248296 True 750 lncRNA 0.46 4 2959355 2961485

Neighbor

gene id symbol gene type direction distance location
CI01000051_02332216_02342649 PRKAA2 coding upstream 616142 2332216 ~ 2345195 (+)
CI01000051_02285060_02291993 NA coding upstream 667082 2284139 ~ 2292273 (+)
CI01000051_02280290_02283028 NA coding upstream 675987 2280290 ~ 2283368 (+)
CI01000051_02060996_02061735 NA coding upstream 897000 2060534 ~ 2062355 (+)
CI01000051_01976321_01985259 PCSK9 coding upstream 973196 1976080 ~ 1986159 (+)
CI01000051_03014282_03014572 NA coding downstream 52192 3013677 ~ 3014761 (+)
CI01000051_03022303_03035625 TMED5 coding downstream 60009 3021494 ~ 3035855 (+)
CI01000051_03038457_03041581 PIGC coding downstream 75367 3036852 ~ 3042733 (+)
CI01000051_03107566_03109607 ITPA coding downstream 146081 3107566 ~ 3109730 (+)
CI01000051_03128080_03133290 NA coding downstream 166595 3128080 ~ 3133321 (+)
G218889 NA non-coding upstream 50598 2908505 ~ 2908757 (+)
G218886 NA non-coding upstream 56052 2903008 ~ 2903303 (+)
G218884 NA non-coding upstream 67237 2891883 ~ 2892118 (+)
G218877 NA non-coding upstream 96345 2862726 ~ 2863010 (+)
G218862 NA non-coding upstream 118300 2840796 ~ 2841055 (+)
G218927 NA non-coding downstream 711 2962196 ~ 2962527 (+)
G218930 NA non-coding downstream 11663 2973148 ~ 2974068 (+)
G218891 NA non-coding downstream 78118 3039603 ~ 3040918 (+)
G218984 NA non-coding downstream 83311 3044796 ~ 3045078 (+)
G218986 NA non-coding downstream 87151 3048636 ~ 3049404 (+)
CI01000051_00638200_00720543 CDC42BPB other upstream 2234651 637590 ~ 720669 (+)
G217075 NA other upstream 2575227 324465 ~ 384128 (+)
G218981 NA other downstream 283958 3245443 ~ 3246873 (+)
CI01000051_04374052_04393328 NA other downstream 1412925 4372658 ~ 4393677 (+)
G219803 NA other downstream 1953489 4914974 ~ 5052033 (+)
CI01000051_06825895_06830637 NA other downstream 3864314 6825895 ~ 6830637 (+)
G221319 NA other downstream 4380556 7342041 ~ 7342546 (+)

Expression


Co-expression Network