XLOC_009751


Basic Information

Item Value
gene id XLOC_009751
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 12117631 ~ 12139336 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021897
AGAGTGTGAGCGACGGCGTCTGACATCAGCGCTGATAAAGGACAGAAACAGACTCAATAACTCTCTACCCTTTGGCCATAACACAGAAGTGAGAGAGGAGCAAAGTTCTTCTGCATTGCACAAGCCCAAAGTTACAGATAACAGAACTACACTAGCATACTAATGACGATGCCTTGACCTTGACGTCTTTAATGGGAAGTCTATCAAGCATGCAGTGCCTCTGGAAAGAAGCAAAACAAGCTCTTATACTGCTGATCTTTAGTTATTAGGCATTCATAAAGTCAAGCCTCTTGGCCATAACAGGGTCTGAAGTGAAGATCGTTTTCCCAGAATAAATGAACAGAATCTATTTAACTGCAAAAGCCCTTATAGGGGTGATCCGTCATGCAGTGGGTTCAAGGATTACTGGTTTAGGTGAAATGTTGAATTCTTACCCCCTCCCTCCATGCCCTGAGCAGCTGTGTTCACAGCGTGAGACAAGGAGCAGACGATTCGGAGCTCAGGGAACAAGGGAACCCCTTGAGGACCCTCAAACTCAGCAGCTGGACGGGCCAGATGGGGTCCCACCCCGGAGAGGGAGATCTGAGGTGCGTCAGGCTGGAGAACGACCAGGTAACCCTCCAGCTGTCTGAGAGAGAGACAACTCTCCTCACTGAAACACCTGCGGCACAAGAGAAGTTCAACAATATACAACATGTGTACATTTACTGCATGCTACTGTTTTTTAGGTTGCTATGTATTAAGAAATTCTAGATAACATAGCAAGACCCCTTGTTGACATATTTGAGATATGTGGTTTATTTGAACAGCAAAGTTAAAACATA
>TCONS_00021898
AGAGTGTGAGCGACGGCGTCTGACATCAGCGCTGATAAAGGACAGAAACAGACTCAATAACTCTCTACCCTTTGGCCATAACACAGAAGTGAGAGAGGAGCAAAGTTCTTCTGCATTGCACAAGCCCAAAGTTACAGATAACAGAACTACACTAGCATACTAATGACGATGCCTTGACCTTGACGTCTTTAATGGGAAGTCTATCAAGCATGCAGTGCCTCTGGAAAGAAGCAAAACAAGCTCTTATACTGCTGATCTTTAGTTATTAGGCATTCATAAAGTCAAGCCTCTTGGCCATAACAGGGTCTGAAGTGAAGATCGTTTTCCCAGAATAAATGAACAGAATCTATTTAACTGCAAAAGCCCTTATAGGGGTGATCCGTCATGCAGTGGGTTCAAGGATTACTGGTTTAGGTGAAATGTTGAATTCTTACCCCCTCCCTCCATGCCCTGAGCAGCTGTGTTCACAGCGTGAGACAAGGAGCAGACGATTCGGAGCTCAGGGAACAAGGGAACCCCTTGAGGACCCTCAAACTCAGCAGCTGGACGGGCCAGATGGGGTCCCACCCCGGAGAGGGAGATCTGAGGTGCGTCAGGCTGGAGAACGACCAGTGCTGCAGACAATAGTCTCCTCCTCTTTGCGGGTTCCTCTCGCCTGATTGGCTGGTGGCTGAGTGCTGGCTCCTCCTCGTCTCATCCATAGCTGCAGGGTGAAGTGATCGCCGGACACTGCTGAAGCCACTGAATCGGGCACTACAGCAACATGAGTGGAGCCGTTAAAagaaaacaccagcgaagaatcGGAGGAGGGCAGAGTCGGCAGCGCAGCTGTCCAGTTGGTCGCAGGAGATGGTGGTGGCAGGAGGTCCACTTCACCTCTCACTGCACCTGCAAACATTAAAAGGGTCATGTTATAAATACTTTTAGTAAGTAGCAAAAAAGCCATAACTCAGTTTCAACTCAGGGTTTGGATTCTCCAACAAGGGCTCAATGGATAGGAATTGTATAGGAAATAGACTGACTTTTAACTTAATACTTAATTCAAGAAAATGCAACAAGAATTGACAAAAATGGACTGAGTATGTCATTGAAAActgtttgtaaaaaaatgtgcttCAGATGTATTGTGACAACcgctttgaattgtttttttatttgtttttttttcttcctct

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021897 False 824 lncRNA 0.45 2 12117631 12118526
TCONS_00021898 True 1175 lncRNA 0.46 3 12117631 12139336

Neighbor

gene id symbol gene type direction distance location
XLOC_009750 gnb3a coding upstream 67869 12022543 ~ 12049762 (+)
XLOC_009749 p3h3 coding upstream 110803 11992498 ~ 12006828 (+)
XLOC_009748 cxcr3.3 coding upstream 277497 11834516 ~ 11840134 (+)
XLOC_009747 cxcr3.2 coding upstream 292328 11818126 ~ 11825303 (+)
XLOC_009746 si:dkey-250k15.4 coding upstream 332345 11779534 ~ 11785286 (+)
XLOC_009752 tpi1b coding downstream 97003 12236339 ~ 12254994 (+)
XLOC_009753 zgc:92606 coding downstream 125822 12265158 ~ 12276225 (+)
XLOC_009754 si:dkey-26c10.5 coding downstream 141696 12281032 ~ 12294468 (+)
XLOC_009755 CR388102.1 coding downstream 160833 12300169 ~ 12300286 (+)
XLOC_009756 CR388102.6 coding downstream 241394 12380730 ~ 12380846 (+)
XLOC_009737 NA non-coding upstream 533753 11580652 ~ 11583878 (+)
XLOC_009736 NA non-coding upstream 539224 11573189 ~ 11578407 (+)
XLOC_009733 NA non-coding upstream 740786 11361760 ~ 11376845 (+)
XLOC_009724 NA non-coding upstream 1499945 10617354 ~ 10617686 (+)
XLOC_009719 CU929328.1 non-coding upstream 1727844 10387719 ~ 10389787 (+)
XLOC_009764 NA non-coding downstream 823624 12962960 ~ 12963877 (+)
XLOC_009765 NA non-coding downstream 972928 13112264 ~ 13115609 (+)
XLOC_009766 NA non-coding downstream 1029536 13168872 ~ 13172698 (+)

Expression


Co-expression Network