XLOC_009736


Basic Information

Item Value
gene id XLOC_009736
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 11573189 ~ 11578407 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021896
gagtgtacgaatgtttctcagtactgagttgcagctggaagggcaaccagctgtgtaaatcatatgctggataagagttggcggttcattctgctctgggggccgctgatgaaaaaagggactaagcgaaaggaaaataaatgaatgagtgaatgaataattgtGCAGCACTAGGTGGCGCAGTGAGCTCTCCGTCTTCATTCTCAGCAGTCTCTGTATCAGCAGTTTATCATTGACTGAAATCTGAAGTTAACGATTTGAGCTAGCATTCCTGACAGATCGCTTGATCATGATGGTTTCACATGGATTATTCTGGACTCTGTGGATGGTGACATGTTTTGGAGAATGTTTAGGTCAAGATCTTCAGTTTCCTGAGCTGCATGGAGCAATAGGAGGAAGTGTGAGATTCACCCCTAATAATCCACCATCTTCAATTGATGTATAGTTACCTG
>TCONS_00019490
CTTGATCATGATGGTTTCACATGGATTATTCTGGACTCTGTGGATGGTGACATGTTTTGacaCTCTCTCCCTGGAGCTCTTGAACCTGAAAATGGAGGATTCTGGGTCATACAGTTTGACTGTGATTACTAGTAGTGCAAATCAACTTAGAGGAGAAACTTCATTACAGGTGTTCGAAATAATATCTAATGTTACACTTACTGGTCCAGAAGAAGCATTAATCGAGGGTGAATCATCTGCTAACTTCACCTCTGAGGGAAGCGGAGGCACCGTCACCTCTGTGCAGTGGATGAAGGATAACAGTCCTCTGTCTTCTAGCAGCAGAATCATCTTCTCATCTGATAACAGATCAGTGTCCATCAGTCCAGTGGAGAGATCAGACACTGGAGAATATCAGTGTACATACAGTAACCCTGTCAGCTCTGAGACGGCAAAACTCACCCTGATTATCAACTATGGACCAGATGGTGTTTTAATTAAAGGTCCAGATGTGGTGGATTTAGGGGTTCAAGtgtttttgtcttgctttgcAAATTCTGAACCTTCTGCTTCATTCAGCTGGTTGTTTAATGGGTCAAACACTGGTGTGACCACAGACAAATTCACCATAGATAAGTCTGACTTCACAGACAGTGGAGAATACATCTGTACAGCTTTTAATGAGTTCACAAACCAAAGAAAAGCTGATGCACATCTTTTGTTAGTTAAAGCTGGAGGTGGAGGACTGTCAGCAGGTGCGATAGCAGGGATTGTCATTGGGGTTTTAATTGCAGTTTCAGGCATTTGTGGCCTGTTCGTCTATTTAACAAAA

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0007492 endoderm development biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0048264 determination of ventral identity biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0060030 dorsal convergence biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0060182 apelin receptor activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000095772

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021896 False 452 lncRNA 0.43 2 11573189 11573798
TCONS_00019490 True 811 mRNA 0.43 5 11573471 11578407

Neighbor

gene id symbol gene type direction distance location
XLOC_009735 zgc:198329 coding upstream 3460 11558868 ~ 11569729 (+)
XLOC_009734 grik5 coding upstream 17255 11483811 ~ 11555934 (+)
XLOC_009733 NA coding upstream 196344 11361760 ~ 11376845 (+)
XLOC_009732 znf574 coding upstream 228462 11297703 ~ 11344727 (+)
XLOC_009731 gsk3ab coding upstream 281041 11242443 ~ 11292148 (+)
XLOC_009737 NA coding downstream 2245 11580652 ~ 11583878 (+)
XLOC_009738 si:dkey-11o1.6 coding downstream 7169 11585576 ~ 11593545 (+)
XLOC_009739 si:dkey-11o1.7 coding downstream 18979 11597386 ~ 11598447 (+)
XLOC_009740 si:dkey-11o1.3 coding downstream 24689 11603096 ~ 11621551 (+)
XLOC_009741 cxcr3.1 coding downstream 45549 11623956 ~ 11642009 (+)
XLOC_009724 NA non-coding upstream 955503 10617354 ~ 10617686 (+)
XLOC_009719 CU929328.1 non-coding upstream 1183402 10387719 ~ 10389787 (+)
XLOC_009718 NA non-coding upstream 1193368 10378331 ~ 10379821 (+)
XLOC_009715 FP016064.1 non-coding upstream 1248524 10324549 ~ 10324665 (+)
XLOC_009751 NA non-coding downstream 539224 12117631 ~ 12139336 (+)
XLOC_009755 CR388102.1 non-coding downstream 721762 12300169 ~ 12300286 (+)
XLOC_009756 CR388102.6 non-coding downstream 802323 12380730 ~ 12380846 (+)
XLOC_009764 NA non-coding downstream 1384553 12962960 ~ 12963877 (+)

Expression


Co-expression Network