XLOC_009741 (cxcr3.1)


Basic Information

Item Value
gene id XLOC_009741
gene name cxcr3.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 11623956 ~ 11642009 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019494
CTTCAGAGACTCGATCATGACGGTTCCTCGTGGCTTATACTGGACTCTGTGGGTGGTGGCATGTTTTGGTCAAAGTTTTAATCAAGATCTTCAGTTTCCTGAGCTGACTAATGGGGCAGTAGGAGAAAGTGTGAAGTTCACACCTGATAATATACCATCAGAGATTTTGTCAGTTTCCTGGCATTTTGGAGACATTTTTATATTGAATGGAAACCCTGATTCACCCTTAATATTCCCAGCATATGAAGACAaagtcagttttgacaaaaacaCTCTTGCTCTGGAGCTCTGGGACCTGAAACTGGAGGATTCTGGATCATACAGTCTGACTGTGATTACTAGTAGAGGAAATTCACATAAAGGAGAAACTTCGCTACAGGTGTTCGaaaaaataaactacGTTGCGGTCACTGGTCCACATGAAACTGAAGCATTAATCGAGGGTGAATCATCTGCCAACTTTACCTCAAAGGGAAACGGCAACGTCACCTCTGTGCAGTGGATGAAAGATAACAGTCCTCTGTCTTCTAGCAGCAGAATCATCTTCTCATCTGATAACAGATCAGTGTCCATCAGTCCAGTGCAGAGATCAGACACTGGAGAATATCAGTGTACATACAGTAACCCTGTCAGCTCTGAGACGGCAAAACTCATCCTGATCATCAACTATGGACCAGAAGGTGTTTCTATTAAGGGTCCAGATATGGTGGATTTAGGGGTTCAAGTGTTTTTGTCTTGCTCTGCCAATTCTGAACCTTCTGCTTCATTCAGCTGGACGTTTAATGGGTCAGACACTGGTGTGACCAAAGATGCATTGACCATAGATAAGACTGACTTCACAGACAGTGGAGAATACATCTGTACAGCCTTAAATAGAGTCATAAACAGACGTGAATCTCAAAGACATGTTTTACTAGTTCAAGCTGGTTTGGGAGGAGGACTGTCAGCAGGAGCAATAGCTGGGATTGTCATTGGAGTTTTAGTAGCAGTTGGAGGCATCTGTGGTCTTATTGtctatttaacaaaaaacaacaaaat

Function

symbol description
cxcr3.1 Predicted to enable C-C chemokine binding activity and C-C chemokine receptor activity. Predicted to be involved in several processes, including calcium-mediated signaling; cell chemotaxis; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within several processes, including G protein-coupled receptor signaling pathway; angiogenesis; and regulation of leukocyte migration. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Human ortholog(s) of this gene implicated in asthma. Orthologous to human CXCR3 (C-X-C motif chemokine receptor 3).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007204 positive regulation of cytosolic calcium ion concentration biological_process
GO:0006935 chemotaxis biological_process
GO:0006954 inflammatory response biological_process
GO:0006955 immune response biological_process
GO:0002685 regulation of leukocyte migration biological_process
GO:0019722 calcium-mediated signaling biological_process
GO:0007165 signal transduction biological_process
GO:0060326 cell chemotaxis biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016493 C-C chemokine receptor activity molecular_function
GO:0016494 C-X-C chemokine receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004950 chemokine receptor activity molecular_function
GO:0019956 chemokine binding molecular_function
GO:0019957 C-C chemokine binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060130-38 Predicted to enable C-C chemokine binding activity and C-C chemokine receptor activity. Predicted to be involved in several processes, including calcium-mediated signaling; cell chemotaxis; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within several processes, including G protein-coupled receptor signaling pathway; angiogenesis; and regulation of leukocyte migration. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Human ortholog(s) of this gene implicated in asthma. Orthologous to human CXCR3 (C-X-C motif chemokine receptor 3).

Ensembl:

ensembl_id ENSDARG00000078177

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019494 True 1038 mRNA 0.42 5 11623956 11642009

Neighbor

gene id symbol gene type direction distance location
XLOC_009740 si:dkey-11o1.3 coding upstream 2405 11603096 ~ 11621551 (+)
XLOC_009739 si:dkey-11o1.7 coding upstream 25509 11597386 ~ 11598447 (+)
XLOC_009738 si:dkey-11o1.6 coding upstream 30411 11585576 ~ 11593545 (+)
XLOC_009737 NA coding upstream 40078 11580652 ~ 11583878 (+)
XLOC_009736 NA coding upstream 45549 11573189 ~ 11578407 (+)
XLOC_009742 si:dkey-250k15.9 coding downstream 10582 11652591 ~ 11653478 (+)
XLOC_009743 si:dkey-250k15.10 coding downstream 18830 11660839 ~ 11680970 (+)
XLOC_009744 si:dkey-250k15.7 coding downstream 41539 11683548 ~ 11709759 (+)
XLOC_009745 ceacam1 coding downstream 82221 11724230 ~ 11760596 (+)
XLOC_009746 si:dkey-250k15.4 coding downstream 137525 11779534 ~ 11785286 (+)
XLOC_009733 NA non-coding upstream 247111 11361760 ~ 11376845 (+)
XLOC_009724 NA non-coding upstream 1006270 10617354 ~ 10617686 (+)
XLOC_009719 CU929328.1 non-coding upstream 1234169 10387719 ~ 10389787 (+)
XLOC_009751 NA non-coding downstream 475622 12117631 ~ 12139336 (+)
XLOC_009755 CR388102.1 non-coding downstream 658160 12300169 ~ 12300286 (+)
XLOC_009756 CR388102.6 non-coding downstream 738721 12380730 ~ 12380846 (+)
XLOC_009764 NA non-coding downstream 1320951 12962960 ~ 12963877 (+)
XLOC_009765 NA non-coding downstream 1470255 13112264 ~ 13115609 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_04815074_04817608 NA coding CI01000016 null 4815074 ~ 4817889 (+)