G224160


Basic Information

Item Value
gene id G224160
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000052
NCBI id null
chromosome length 3494004
location 1481503 ~ 1482710 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU254241
CCAGAAGCCTGGGATAGCTTGCGTGATGGCGCTGCGCTGGTCCAGGTGAGGGCGTCGCTGGCGGCTCAGTTTCATCTCCAGACGTTGATGCAGACGCGCGCCTTTCTTCTCCAGAGCATCCAGCCGCATCTGTACCTGTGCGAGCAGCGCGACTGACTGCCGCACCTCCGGGGCCATCTTCACCGACACTATGGCACACTCACCGTCCTCGTTATCCTCATTATCAGAGGCGACAGACGAACTGGCTGTGGAGGAAGAGCCAGGAAGGGAGTCTTCATCCTCCTCCTCCTCCTCATCATCATCCACAAACGATGCCTGCTCTGGGTCTTCTCTGTCCTCGCAGATCAGCAGGGATGAGGAGCTGTCCGCCGCGGCTGCCTCAGTCCTTCTCTCGCTCTGAGAGCAACCTGGACGATTGGACTTATCCCTTGATTTCTCTCGGCTCGCTTTTTTAGACGAACAGGGCATTTCTTTACAGTCTTCGTCCCCGTCTCCACCGGTCAGACTCGCAAGCGCCTCTGCTGCGGCGATGGCAGCGTAATCTGACTGCTGGCGCGCGCTCTCACCTCCACCAGCCTGTCTCGTGCTCTCCTCCTGTGCGGCTGCTTCATCCTGAATTACGACATCCTTCTCTTCAGTTCCTTCGGGGAGCTCAGCTCCATGCTTTGGCTCACCATTCCCAACTTTCTCGGGGTCTGCATCTTCATGAGACTCATTTCTTGGTTCCTCATCACTTACTTTCGCCTGCTTGAGCAGCGTGGACTCACTCTCTCCACTCGGACTTGCACTTCTTTTTCTCTGGATAATTTCGGACGGCTGGTTGCTGTCCGAGTTTGTACTCATGATACTGACTAGTTGTAGATTTATCAGCCGTAAATTATGATTTTAAAACAGATTCTAAGTGATAATTATGTTAACTGTGCGGGTCTCTATCCCTAGCCCGCGTTCGCATTACAGCACTTCCAATATCCAATTCTGCGCAAATGTCGGCAGGCCTAGGTAGCTTCCTAGCGCTGCATGAGGCTAGTTCATATTTTCGCTGACTGTCGAATATCAATTATTTCCGTTTGTATTTTGAAAGTACTCGCAACTTTGAGTTATTTTCCCCTTAAAAGTCACAATTCGCCTAAAATGCCCAGTTCTGTAGTATTTGTTTACAGTTTGCCCTTCCGTTCGCCATTTATCTGAGGCTTTACATACGAGCGCGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU254241 True 1208 lncRNA 0.52 1 1481503 1482710

Neighbor

gene id symbol gene type direction distance location
CI01000052_01460943_01461785 NA coding downstream 19037 1460743 ~ 1462466 (-)
CI01000052_01452114_01452373 NA coding downstream 29130 1451305 ~ 1452373 (-)
CI01000052_01436313_01438695 TMEM9 coding downstream 42626 1435372 ~ 1438877 (-)
CI01000052_01434456_01434879 NA coding downstream 46624 1434216 ~ 1434879 (-)
CI01000052_01413443_01433078 CACNA1SB coding downstream 47859 1413208 ~ 1433644 (-)
CI01000052_01519442_01528091 WASA coding upstream 36452 1519162 ~ 1528091 (-)
CI01000052_01534774_01542595 NA coding upstream 51910 1534620 ~ 1543017 (-)
CI01000052_01560926_01561708 TMEM81 coding upstream 78129 1560839 ~ 1562069 (-)
CI01000052_01569176_01577898 NA coding upstream 86225 1568935 ~ 1581760 (-)
CI01000052_01601908_01603332 NA coding upstream 118997 1601624 ~ 1603861 (-)
G224177 NA non-coding downstream 1954 1474921 ~ 1479549 (-)
G224300 NA non-coding downstream 15912 1465349 ~ 1465591 (-)
G224299 NA non-coding downstream 16387 1464883 ~ 1465116 (-)
G224298 NA non-coding downstream 16665 1464602 ~ 1464838 (-)
G224163 NA non-coding downstream 33516 1447372 ~ 1447987 (-)
G224142 NA non-coding upstream 2372 1485082 ~ 1486869 (-)
G224302 NA non-coding upstream 12984 1495694 ~ 1495931 (-)
G224303 NA non-coding upstream 13992 1496702 ~ 1497090 (-)
G224305 NA non-coding upstream 15379 1498089 ~ 1498288 (-)
G224308 NA non-coding upstream 17399 1500109 ~ 1500519 (-)
G224181 NA other downstream 648002 828155 ~ 833501 (-)
G224037 NA other downstream 900043 580900 ~ 581460 (-)
G223042 NA other downstream 1457923 23146 ~ 23580 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036472 tspy coding NC_007119.7 CM002892.2 25708067 ~ 25716074 (-)