XLOC_036472 (tspy)


Basic Information

Item Value
gene id XLOC_036472
gene name tspy
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 25708067 ~ 25716074 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071272
GTATGTAAAGCCTCGGATAAATGGCGAACGGAAGGACAAACTGTAAACAAATACAACAGAACTGGACGTTTTTAGGCGAATTGTGACTCTTAAGTGGGAATGTACTCAACATAATTCATTCTGTGCACAAATACAAAGGACATTTTTCGACATGCGACAGTCAGCGAGGACCTGAACTAGCATCTTTCAGCGTTAGATAGCTGGCTAGGCCTGCTGACATTTGCGCAGACTTGGAAACTGGCAGTGTTGTAATGCGAGAGCGGGCTACGGATAGAGTCCCGCAGGTAAAATAATTGTCCGCTAGGAAATAATCATATACGTCTGATAAAGTTACAACTAGTCAGTATCATGAGTACTAATTCGGACAGCAGCCAGCCGTCCGAAACTAACACGAGGAAAAGAAGTGCAAGTCCGAGCGGAGAGTGTGAGTCCACGCAGCTCAAACAGGCGAAAGTAAGTGTCGAGGAACAGAAAAATGAGCCTCAAGAGGACGCAGAGCCCGAGAAAGTTGGGAATGGTGAACCAAAAGATGGAGCCGAGCCCTCTGAAGGAGCTAAGGAGAAAGAGGCGAAGATTGAGGACGAAGTAGCCGCTCAGGAGAGCACTGGACAGGCTAATGTGAGTGGAGGCGAGAGCGCGCGCCAGCCGTCAGATTCCGCTGCCATCGCCGCTGCAGAAGCACTCGCTAGTTTGACCGGCGGAGACGCGGACGATGACTGTAAAGAAATGCCCTGCTCGTCTAAAAAAGCCAGCAGAGAGAAGTCAAGGGATAAGTCTAATCGTCCCGGTTGCTCTCAGAGCGATAGGAGGACGGAGGCTGCCGCTGCGGATAGCTCCTCATCCCTGCTGCTCTGCGAGGACCAAGAAGATCCATCATTTGTGGATGACgatgaggaggaagaggaggatgaagacTCTCTGCCCGGCTCTTCCTCCACTGCGAGTTCGTCTGTCGCTTCTGATAATGAAGATAACGAGGATGGCGAGTGTGCCATAGTGTCCGTGAAGATGGCCCCGGAGGTGCGGCAGTCGGTGGCGCTGCTCGCACAGGTACAGATGCGGCTGGACGCGCTGGAGAAGAAAGGCGCGCGTCTGCATCAGCGCCTGGAGATGAAGCTGAGCCGCCAGAGACGCCCTCACCTGGACCAGCGCAGCGCCATCACACAGGCCGTCCCGGGCTTCTGGGTCACCGCTCTTCTGAATCATCCACATTTATCAGCACATATCGATGAGACTGATGAAGACGCTCTTAGCTACATGACTAACTTAGAGATTGAGTCTTTCAAGAACAACAAACTTGGATACCGCATCTGCTTCCATTTCCGGCGAAATCCtttctttcaaaacaaaatgattgTGAAAGAGCTTCATCTCGGTATGGGAGGGTCTCCAGTGTCCTTCTCAAACCCAATATTGTGGCACAGAGGGCAGAATCTGGTTGGGAGTGGAGAACCACGTCGAACATCGCAGGGGGTCTATCAGAGCTTCTTCCATTGGTTCAGTGACCACAGCAACCCAGGACGGGATGACATAGCACAGATCTTGAGGGAAGACCTGTATAGAAACCCTTTGAGGTATTATTTAACTCCACTTTGGGAGCCACGAGAGAATGGCAGCAGTGCTCCTAAACCTCAGGGCAGCAGTAATAGAGATGAGTGTGTGATCATCTCAGATTCCGATGAAGACGAAGAGCAGAATAGCCAAAGCCTGGGACaggaggatgatgaagatgatgaccaAGGTGGAGGTTCAGAGGAGAATGAAAGAGATGAGGGGGAATCCTCCTGTGAAGAGAGAGATGAAGAGGAAGTGGATGTTGAGGAAGTAGAAGTGTCACATGACTCTGGTGGTTGCGAGGCCAGAGAGCAAGAGGAGGAAGATATCGATGTGGATGAAGAGAAGAGTTAGGACGTGGTCGTCTCCCATTTTATGCAGAATAGCATCATTAGATATTTCTATGATCTATTTTACTGTTTTCTGGATAAATAAGACTCTGTGTGGTTAAGGATCAGGGTTTAACTAATGTCTTCATTGTAGATGGTACTTCAAAATCACCATGAATATTCAAAGTGTGCACTCCTCTGAAAACATCTAGTTTTCTTAAGATTTCATCACATTTTACACTTTAATAAATTTCACGGAGAGGGCTACCGATACCCAAAAGACCCCTTTTTATCTCTGAACTGACTGTTTAAAGCTTGGGATTAGTTTTTCTTttgctagtttgtttgtttttttcatttatgaaaTAAAGTAGCATTGTGTGTCACAAGTGTATTCTCACCATAGGAGTTAATATAATCATGACCAGCTGTAAAAACAACaccatatttttttatgtgtattttggtTAATGGTGTGTCCCTTTTTTATTCTCATCTACAGAAATCTTAACATCATGAAGCAATGTTTCCTTGCCTTCTTATTGTTCTTAAACTCTACAGCCGCATTTTAGTAATAACGAAAACAGGCAGGCGTTCTGAAATGCACTTCATTCTGAACCAAAACTAGGTAACTCAGGGATGTTTACTCTTACAGGTGTGTTTCCCTTCAGAAGcttcattcatttaattgttgTCTTTAATACATAACACCATAGCGCTGATGGACTTCTAAATAATCGTTAGTTTATTTCACCGTGTTTACATGCAGCTATTATCCTGACACTTCATACCTCTTGCTATGATGTTTGGTGTCATACGATTTCTGAAACTACTTTTGTCATTTAAGTTGGATATCTACACACTGTTAACACGTGCACGCTTGCATTTATTCACTGCGAAGTGCAGCTGTAATCTTATTTAAATGAGCAAAATAGTGGCAAGGCCATTTGTTGTCGTTTTTCATCATGTGTGCAcctgtttttaattaaatgcttGGGTAATATTGTAAAAATAGTGACTATGTAAACATTAGTTTCATTGACTTTTCTATTCATATCATTTATTTCTGATAGTTGTTCCTCTACTCCCTTGCAATAATATATTTTCCTTAActttggtcagtcagtcagtcagtcagtcagtcagtcattataGAAGGAAATCACTATAAATGTTTATTGATGGAGTTCATATTAAGGAGACTGTTTTAAAGACATATTTGTTTACATTGGTTTTAAGTTTCGACCTGTAAAAATctggtttaaaaaatgaaatgctgtTAACTCATTGTAAGTATGTTGGGTTGTACTTCTTCCGCAAGGCCAGTGGTATGTAAATAATTTGTTCCCTTAAAAAAGGTTTATAATTTGTTATTGAACTATTAGAGTGAAATTGACCTACAATATCAAAGAAAAGCTATATTTTGTGTGCTAAATTTTATAGCGAactacaatttttaaatatgtgtttggttttttgtttggttttccaTGTCAAATAAAGGTTTGTCTTTTCATTCAGAA

Function

symbol description
tspy Predicted to enable chromatin binding activity and histone binding activity. Predicted to act upstream of or within nucleosome assembly. Predicted to be active in chromatin and nucleus. Human ortholog(s) of this gene implicated in gonadal dysgenesis; prostate cancer; and sudden infant death syndrome. Orthologous to several human genes including TSPYL1 (TSPY like 1) and TSPYL2 (TSPY like 2).

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9158 Predicted to enable chromatin binding activity and histone binding activity. Predicted to act upstream of or within nucleosome assembly. Predicted to be active in chromatin and nucleus. Human ortholog(s) of this gene implicated in gonadal dysgenesis; prostate cancer; and sudden infant death syndrome. Orthologous to several human genes including TSPYL1 (TSPY like 1) and TSPYL2 (TSPY like 2).

Ensembl:

ensembl_id ENSDARG00000005015

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071272 True 3406 mRNA 0.43 7 25708067 25716074

Neighbor

gene id symbol gene type direction distance location
XLOC_036471 sema3ga coding downstream 646 25650229 ~ 25707421 (-)
XLOC_036470 stk38a coding downstream 102530 25590841 ~ 25605537 (-)
XLOC_036469 prex1 coding downstream 138147 25423133 ~ 25569920 (-)
XLOC_036467 kcnq2a coding downstream 285876 25368034 ~ 25422191 (-)
XLOC_036468 NA coding downstream 311566 25395106 ~ 25396501 (-)
XLOC_036473 foxp3a coding upstream 234 25716308 ~ 25729543 (-)
XLOC_036474 BX544876.1 coding upstream 14938 25731012 ~ 25734935 (-)
XLOC_036475 suv39h1b coding upstream 34889 25750963 ~ 25811172 (-)
XLOC_036476 taf10 coding upstream 95818 25811892 ~ 25817106 (-)
XLOC_036477 efhd2 coding upstream 102548 25818622 ~ 25846188 (-)
XLOC_036458 NA non-coding downstream 799028 24856986 ~ 24909039 (-)
XLOC_036455 NA non-coding downstream 927079 24780407 ~ 24780988 (-)
XLOC_036450 NA non-coding downstream 1210073 24419950 ~ 24497994 (-)
XLOC_036481 NA non-coding upstream 403149 26119223 ~ 26326501 (-)
XLOC_036482 NA non-coding upstream 499610 26215684 ~ 26229796 (-)
XLOC_036483 NA non-coding upstream 613179 26329253 ~ 26368366 (-)
XLOC_036486 NA non-coding upstream 969755 26685829 ~ 26700335 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G224160 NA non-coding CI01000052 null 1481503 ~ 1482710 (-)