XLOC_036476 (taf10)


Basic Information

Item Value
gene id XLOC_036476
gene name taf10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 25811892 ~ 25817106 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071282
acttgcacatatGAATCGTTCACTTTGAGACTAACAATCtgcgctagcaaaataatctATGGAAATTTTATTAAATGCAGACTTAAGTAGGGAGGGATTAAGGAAAGAATGAGAAGAAGAATTTTTTGTTAGGTTGTAGTTTAGTGCTCATGAAAGAGAAGTTTTAGCTGCCTTTTGATTGTTGCCTGTAATGtcaattgttgttttattgcctTAAATTGTCTGTTATACTTACTTTCCGCCCTCAAAGTGTCTACTTCGGCTTCCATGGCAACCCCATCCTCCGACTCCACTGTATCAAACGGCGTGTATGTGCCCACAGAGATCGCCAACGGAGACGTGAAGCCTGTGATCTCAACTACACCACTGGCAGATTTCCTCATGCAGCTGGAGGATTACACTCCTACAATTCCAGACGCAGTTACAGGATACTATCTCAACAGAGCTGGATTTGAAGCATCAGATCCAAGGATAATTCGTCTCATATCTCTGGCATCTCAGAAGTTCATCTCTGATATTGCAAACGATGCACTACAACACTGCAAAATGAAGGGCACAGCCTCTGGAAGCTCCCGAAACAAGGCCAAGGACAAGAAGTACACTCTGACGATGGAAGATCTGACACCGGCTTTGGCAGAGTACGGCATAAATGTTAAAAAGCCTCATTATTTCATCTGAGAGCTTCATTCTAATGGACTGCTGGAAATGTGCTAATTGTCAAGATGAGAAACATCAGCCCACTTGCTTTTAGGGATTTAGcagcttttttgtatttttgttaagCCTGACTGAGTTATATTATGCCACATGACTTAGTTGATGCCAGTAAAAAATCTtgtataaataaattcattacaaTACAA
>TCONS_00071283
GATTTCCAACACCAAGCGGGATTTCATAGTGGTTGCACACGGAAGTGTTGATCACCTGACGCAGTTGCAGCGTAAATATTTTTATCATCAGAGCGAGCGACCGATACTTCGCCGTTTAAACGGCATAAATGAGCGCTCGACTCAACCCAACATTAGTttaaactgtgtgtgtttttctagTATAGCTTAGCGTTTGCAATACATAAACTAAGCCGGGAAAATGAACGTGGATCTCACGCAGACCGGAGCAGCAGCGGCGGCGTCCAGCAGCAGCAACTGCGTCCCGAACAGCAGCACCACAAACGCCAGCAGCATCCCTGCGCTCGCCAGCAGCAAtgTGTCTACTTCGGCTTCCATGGCAACCCCATCCTCCGACTCCACTGTATCAAACGGCGTGTATGTGCCCACAGAGATCGCCAACGGAGACGTGAAGCCTGTGATCTCAACTACACCACTGGCAGATTTCCTCATGCAGCTGGAGGATTACACTCCTACAATTCCAGACGCAGTTACAGGATACTATCTCAACAGAGCTGGATTTGAAGCATCAGATCCAAGGATAATTCGTCTCATATCTCTGGCATCTCAGAAGTTCATCTCTGATATTGCAAACGATGCACTACAACACTGCAAAATGAAGGGCACAGCCTCTGGAAGCTCCCGAAACAAGGCCAAGGACAAGAAGTACACTCTGACGATGGAAGATCTGACACCGGCTTTGGCAGAGTACGGCATAAATGTTAAAAAGCCTCATTATTTCATCTGAGAGCTTCATTCTAATGGACTGCTGGAAATGTGCTAATTGTCAAGATGAGAAACATCAGCCCACTTGCTTTTAGGGATTTAGcagcttttttgtatttttgttaagCCTGACTGAGTTATATTATGCCACATGACTTAGTTGATGCCAGTAAAAAATCTtgtataaataaattcattacaaTACAA

Function

symbol description
taf10 Predicted to enable promoter-specific chromatin binding activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in histone acetylation and transcription initiation from RNA polymerase II promoter. Predicted to act upstream of or within DNA-templated transcription, initiation. Predicted to be located in nucleus. Predicted to be part of SAGA complex and transcription factor TFIID complex. Orthologous to human TAF10 (TATA-box binding protein associated factor 10).

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
ko03022 Basal transcription factors
ko03021 Transcription machinery
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-060526-334 Predicted to enable promoter-specific chromatin binding activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in histone acetylation and transcription initiation from RNA polymerase II promoter. Predicted to act upstream of or within DNA-templated transcription, initiation. Predicted to be located in nucleus. Predicted to be part of SAGA complex and transcription factor TFIID complex. Orthologous to human TAF10 (TATA-box binding protein associated factor 10).

Ensembl:

ensembl_id ENSDARG00000068641

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071282 False 863 mRNA 0.41 4 25811892 25814263
TCONS_00071283 True 951 mRNA 0.46 5 25811892 25817106

Neighbor

gene id symbol gene type direction distance location
XLOC_036475 suv39h1b coding downstream 720 25750963 ~ 25811172 (-)
XLOC_036474 BX544876.1 coding downstream 76957 25731012 ~ 25734935 (-)
XLOC_036473 foxp3a coding downstream 82349 25716308 ~ 25729543 (-)
XLOC_036472 tspy coding downstream 95818 25708067 ~ 25716074 (-)
XLOC_036471 sema3ga coding downstream 104471 25650229 ~ 25707421 (-)
XLOC_036477 efhd2 coding upstream 1516 25818622 ~ 25846188 (-)
XLOC_036478 opn7c coding upstream 41118 25858224 ~ 25874426 (-)
XLOC_036479 si:dkey-72l14.3 coding upstream 156045 25973151 ~ 25980694 (-)
XLOC_036480 BX784025.1 coding upstream 171511 25988617 ~ 26033176 (-)
XLOC_036481 NA coding upstream 302117 26119223 ~ 26326501 (-)
XLOC_036468 NA non-coding downstream 415391 25395106 ~ 25396501 (-)
XLOC_036458 NA non-coding downstream 902853 24856986 ~ 24909039 (-)
XLOC_036455 NA non-coding downstream 1030904 24780407 ~ 24780988 (-)
XLOC_036452 NA non-coding downstream 1336797 24441528 ~ 24475095 (-)
XLOC_036482 NA non-coding upstream 398578 26215684 ~ 26229796 (-)
XLOC_036483 NA non-coding upstream 512147 26329253 ~ 26368366 (-)
XLOC_036486 NA non-coding upstream 868723 26685829 ~ 26700335 (-)
XLOC_036491 NA non-coding upstream 1150330 26967436 ~ 26971126 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000052_01405500_01408668 TPP1, TAF10 coding CI01000052 null 1403814 ~ 1408862 (+)