XLOC_009785 (polr3c)


Basic Information

Item Value
gene id XLOC_009785
gene name polr3c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 14249546 ~ 14280600 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019570
ACAACACACGTGAGATCAAAAAGTGTGAACTCATCTAAATAACACATACGGATATCTAGATAACTTACTTTTTAGAGATGACAGCACAGGAGGTGCGTCTGTGTGGGCTGTTGCTGCAGGAGCACTTTGGTGATGTGGTGGAAAATGTGGGCACTCATCTCATCCGCAATGGAGTTCTGACCTTGAGAGCTCTTGCCCATGAGACCAAACTGGCTCTTGACCTGGTCAAGAAATCTCTGTGTGTGCTGGTGCAGCATGGGATGTGTACGTTTGGTCCAGGTCGTCGTGGCCCAGCGGGACCTGTGGAGTATCATATCAACTGTGAGCACATCCTACACATGCTCCGTTATCCACGCTACATCTACACCGCCAAGAGTCTGTATGGGGACACGGGAGAGCTCATTGTTGAGGAGATCCTGCAGAGAGGCCAGATGACCATGAGCAGTACAGTCAAGACTGTAGCAGACAGGCTGACCCACAACATGCCAGAGGGTCAGAGTATGGACTACAATGAGGTTGTCTCGGCATTTTCCCGGCTGGTGGAGACTCATTTTCTGCAGCGCTGTCCTCCAATGGCCTCAGCAGAATCGTCAGGCACTGGATCAGCTGAAACTCCTCCAGCTGTAACACAGCCCTCTAACCCAGAGAGCCACCCAGACTGCTACAAACTACCCTACATCAGTCTCTCCGGTCACGGAAAACGGAGACGCTCGAGTGAGGATGGTGAAGCAGATCAGCGTGCGGCAAAAAAAGCCAAGACAGACAGCAGTGAGTGTGGGGATGAAGGGATCCATTGGCAGGTGAATTTCGAACGCTTTCACTTGCACTTTAGGGATCAGGCCATCATCAGTGCTGTTTCCTGTAAACTCGATCAGACTAGCGGTGAGATAGTCAGAACTATGTTGCGGATGAGTGAAGTTACAACATCGGCTAATGCTGCTTTCACACAAGCTCTTTCAGCCAATGAGATTTTCCGAGCTCTTCCATCCAATTACAACATCGCTCGGCCAATTTTAGACCAATACCTTACTCTCCTGGTTGATGATCCGATGGAGTTTGTGGGAAAGGCAGGTGACAGTGGAGGAGGAATGTTTGTTGTCAATCTACACAGAGCACTAGCTAATTTAGCCAGAGCTACACTGGAGTCTGTGGTCCAAGAGAGGTTTGGTTCCCGTTCAGCTCGCATCTTTCGTCTGTTACTACGGAAACGGCACTTGGAGCAGAAGCAGGTGGAGGATTTTGCCATGATTCCTGCCAAAGAGGCCAAAGAAATGCTCTACACACTCCTGTCTGAAAACCTCGTCCAGCTACAGGAAATCCCCAAAACACCTGATCACGCACCCTCTCGAACCTTCTACCTGTACACAGTTAATCAGCTGCCCACCGCAAGACTACTTCTGCAACATTGCTACAAGACAGTTGGGAACTTGATTGAGCGGCGGCTGTATGAGACCAAAGAGAACAAGCGGCTTTTGGAGAAATCTCAGCGGATTGAGGCCATCCTAGCATCCTTGCAGGCGACCGGTGCGGAGGCGACACAGCTGACCGAGGTGGAGGAGATGATCACAGCTCCTGAGAGACAGCAGCTCGAGTCCCTGCGACACCATATAAACAAGTTGGATTCCAGCGAAAACCAGGTGGATGAGACCATTTTTCTTCTGGAATCCTACATTAACTCCACACAGGCCTCTCGCTGACTGTAGACTAGTTTAGGATGTGAAATAGATGGATAAAGGTACATTGTCAAATGGAGATGTTTATTTCCTTTGGAACAAAGAGTGACCGATTTGTATTTAatcacattttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggctgcgaATGCAATTTTAGcatcctttttttttctcatgtggaaaaaataaaaaagtggagttctgttttatttatggcttacaaaagttttatttaataattagtttGAATGTCAAAAACTCAAAAACAGTGTACAAACCTGAAATggacattaaaacaaaaaaggaaacata

Function

symbol description
polr3c Predicted to enable DNA-directed 5'-3' RNA polymerase activity and single-stranded DNA binding activity. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Orthologous to human POLR3C (RNA polymerase III subunit C).

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005666 RNA polymerase III complex cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0003697 single-stranded DNA binding molecular_function

KEGG:

id description
ko03020 RNA polymerase
ko04623 Cytosolic DNA-sensing pathway
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-040426-992 Predicted to enable DNA-directed 5'-3' RNA polymerase activity and single-stranded DNA binding activity. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Orthologous to human POLR3C (RNA polymerase III subunit C).

Ensembl:

ensembl_id ENSDARG00000057562

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019570 True 2027 mRNA 0.47 15 14249546 14280600

Neighbor

gene id symbol gene type direction distance location
XLOC_009784 gba coding upstream 18234 14216581 ~ 14231312 (+)
XLOC_009783 dap3 coding upstream 33929 14201401 ~ 14215617 (+)
XLOC_009782 NA coding upstream 90821 14153990 ~ 14158725 (+)
XLOC_009781 si:dkey-85k15.11 coding upstream 157701 14078748 ~ 14091845 (+)
XLOC_009780 rusc1 coding upstream 194237 14029283 ~ 14055309 (+)
XLOC_009786 NA coding downstream 180662 14461262 ~ 14493478 (+)
XLOC_009787 NA coding downstream 194256 14474856 ~ 14481801 (+)
XLOC_009788 BX324006.1 coding downstream 198560 14479160 ~ 14484367 (+)
XLOC_009789 BX005402.1 coding downstream 198951 14479551 ~ 14508200 (+)
XLOC_009790 deptor coding downstream 307541 14588141 ~ 14675907 (+)
XLOC_009777 NA non-coding upstream 295399 13950017 ~ 13954147 (+)
XLOC_009776 NA non-coding upstream 303970 13942073 ~ 13945576 (+)
XLOC_009769 NA non-coding upstream 635358 13612654 ~ 13614188 (+)
XLOC_009768 NA non-coding upstream 747581 13499361 ~ 13501965 (+)
XLOC_009791 NA non-coding downstream 341924 14622524 ~ 14622765 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_06058748_06068258 POLR3C coding CI01000016 null 6058748 ~ 6068648 (+)