CI01000053_02003828_02014352 (CLTC)


Basic Information

Item Value
gene id CI01000053_02003828_02014352
gene name CLTC
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 2002910 ~ 2014352 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000053_02003828_02014352.mRNA
GTTTGCTTTGCCTGCGTTGATGGGAAGGAGTTTCGTCTGGCTCAGATGTGTGGATTACATATTGTCGTTCATGCTGATGAACTTGAGGAGCTCATCAACTACTACCAGGACCGTGGCTATTTCGAGGAGCTAATCACCATGCTGGAGGCGGCGCTAGGGTTGGAGCGCGCTCACATGGGCATGTTCACAGAACTGGCCATCCTCTACTCCAAATTCAAACCACAGAAGATGAGGGAGCACCTGGAGCTCTTCTGGTCCAGAGTGAACATTCCCAAGGTTTTGAGGGCAGCTGAGCAGGCTCACCTGTGGGGAGAGCTAGTCTTCCTGTATGATAAATATGAGGAGTATGACAATGCTATCATCACCATGATGAACCATCCTGCAGATGCCTGGAAGGAGAGTCAATTTAAGGACATCATAACCAAGGTGGCTAACGTTGAACTGTATTACAAAGCCGTCCAGTTCTACCTGGAGTTTAAACCGCTGTTACTGAACGACCTGTTGATCGTACTGTCCCCACGTCTTGACCATACTCGTGCCGTCAACTTCTTCAGCAAGGTCAAGCAGTTGCCGTTGGTGAAACCTTACCTGAGATCTGTACAGAACCACAACAACAAGGCTGTAAATGAAGCACTAAATAATCTCTTCATCACAGAGGAGGATTATCAGGCTCTGCGCACATCCATTGATGCCTACGACAACTTCGACAACATATCTCTGGCTCAGAGCCTGGAGAAGCATGAACTCATCGAGTTCAGGCGAATCGCCGCCTACCTGTTCAAAGGCAACAACCGCTGGAAGCAGAGTGTGGAGCTCTGCAAGAAAGACAAACTCTACAAGGACGCAATGCAGTACGCTTCAGAGTCAAAGGATACAGAGCTGGCTGAGGAGCTGCTGCAGTGGTTCTTGCAGGATGACAAGAAAGAGTGTTTTGCCGCCTGCCTGTTTACCTGTTACGACCTGCTGAGGCCCGACGTGGTGCTGGAGACCGCGTGGAGGCACAACCTCATGGACTTCTCCATGCCCTACTTCATCCAGGTCATGAGGGAGTACCTCACCAAGGTTGATGCAATTAAGGAAAAGGTTGATAAGTTGGATGCTTCTGAGTCTTTGAGGAAAGAGGAAGAACAGCTCACAGAGGCACAACCCATTGTCTATGGCACACCCCAGCTGATGCTGACCGCAGGCCCCAATGTCGCAGTACCCCCACAGCAGCCTTACGGCTACGGATACCCCACAGCGACCGGCTACGGACAACCCGCACAGCCAGGCTTCGGCTATGGCATGTAAAGCCCTCCTGCCCACAGCTGTCCATCCATCTCTCCTTAAGTTCCTTACTAGCTTATTGTGGTCTACACACAAGGTTATATAAAGTTTAAAAAAAAAAAGTTACACATTTTAAATTATTTTCCTTAAAATGCAATGAAGGACTTCATTTTTATTTGTGTTGTCAAAGAAAATAATCGGACCACATTTTTTGTTATTTCACATTCCATATATTTAAGGCTACTTATATCACTAGTTTCTTTTTTTGTGAGCTGATTTTTTTAAGGGGGCAATGGGTTGTGTATGTAAATGGAGTGTTGAGAAGAGCAATTAACCTTAAAATATGTCGTGAAGCATCTGATTTGCACTCTGTCGTGAGAGGAAACTAATGTAGAATCTCTTAATTTTGATGTATTGTATGTGAAGAGCTTACACTGTCAGTCTGTTTAATGCATTTCATTATTGTATATTCTGAAAAAGGTTAAAACAATATTTGCATCCATGGGTACATTTAGCTAACACTAAGTAATAATCTGATATTCTACACAAATATGTAGCTGTATGGACATTTTAAGCACATACAGACATGGATATAGTAAACGATTTTAATCCCTTAGCCTAAACGGGTTTCCCCGATCGACCTCGTAGTTGTTAACATCTCATTCACTCCATGTGTAACAGGTGACCTTTCCTTGTATTGAATACAGTGCTCTTTCTTGTGTGAATCCATTTCCATAAATGAGCAAGGGATACATTGATTCCTCTGACTTCTGTGTTTACTCATCCAATTCTTTGTATTGAGGTTTGTGTGTGCCAGGTGTCGTGCTGTTCTAGCTCACTATTTGGAGTGTACAGAAGAATGAAAACACAAATGGATACCAGTGCTTGTCCACCTTGTAAGATTTGTGTACGATCTGCAGAGTCAGAAAATAGGGAAATAAA

Function

symbol description
cltc Enables several functions, including clathrin light chain binding activity; disordered domain specific binding activity; and low-density lipoprotein particle receptor binding activity. Involved in several processes, including amyloid-beta clearance by transcytosis; negative regulation of hyaluronan biosynthetic process; and receptor-mediated endocytosis. Located in cytoplasmic vesicle; lysosome; and mitotic spindle microtubule. Part of clathrin complex. Implicated in autosomal dominant mental retardation 56.

GO:

id name namespace
GO:0008022 protein C-terminus binding molecular_function

KEGG:

id description
K04646 CLTC; clathrin heavy chain

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000053_02003828_02014352.mRNA True 2208 mRNA 0.44 10 2002910 2014352

Neighbor

gene id symbol gene type direction distance location
CI01000053_01982526_02001150 VMP1 coding downstream 1760 1982302 ~ 2001150 (-)
CI01000053_01964024_01971099 RPS6KB1B, RPS6KB1 coding downstream 31811 1963414 ~ 1971099 (-)
CI01000053_01932882_01958701 SNX19B coding downstream 42738 1932855 ~ 1960172 (-)
CI01000053_01847036_01856935 NA coding downstream 145680 1845726 ~ 1857230 (-)
CI01000053_01819436_01827270 CSGR06H11ORF53, CUNH11ORF53, C4H11ORF53 coding downstream 174319 1818987 ~ 1828591 (-)
CI01000053_02029813_02031204 CLTCB, CLTC coding upstream 15461 2029813 ~ 2031790 (-)
CI01000053_02032534_02040859 DHX40 coding upstream 18028 2032380 ~ 2041437 (-)
CI01000053_02041737_02066520 NA coding upstream 27338 2041690 ~ 2066658 (-)
CI01000053_02109802_02117454 NA coding upstream 94819 2109171 ~ 2117957 (-)
CI01000053_02122241_02132642 CLPTM1 coding upstream 107277 2121629 ~ 2132787 (-)
G226542 NA non-coding downstream 71030 1931548 ~ 1931880 (-)
G226553 NA non-coding downstream 71573 1929839 ~ 1931337 (-)
G226614 NA non-coding downstream 226252 1776450 ~ 1776658 (-)
G226609 NA non-coding downstream 254823 1747880 ~ 1748087 (-)
G226645 NA non-coding upstream 49058 2063410 ~ 2063725 (-)
G226647 NA non-coding upstream 54179 2068531 ~ 2068740 (-)
G226649 NA non-coding upstream 69026 2083378 ~ 2083915 (-)
G226543 NA non-coding upstream 89041 2103393 ~ 2104463 (-)
G226657 NA non-coding upstream 91870 2106222 ~ 2106444 (-)
G225812 NA other downstream 536178 1459595 ~ 1466732 (-)
G225574 NA other downstream 1456042 543647 ~ 546868 (-)
CI01000053_02225226_02226481 YPELD, YPEL2B, YPEL1, YPELC, YPEL2 other upstream 203096 2225210 ~ 2226481 (-)
G226826 NA other upstream 551540 2565892 ~ 2567072 (-)
G226963 NA other upstream 982365 2996717 ~ 2997268 (-)
CI01000053_03551506_03551965 NA other upstream 1535981 3550333 ~ 3552847 (-)
G227604 NA other upstream 2072885 4087237 ~ 4087740 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location