CI01000053_03620673_03622682


Basic Information

Item Value
gene id CI01000053_03620673_03622682
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 3620240 ~ 3622685 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000053_03620673_03622682.mRNA
AGCATGGTTGAAAATGCTGCAACAACCATCCAAACCTCACTGTTTCACATCAAATTTCACATCAAATTTCACTGTTTCACATCAAGTTCTCACTCACTGATGGCTTTGGCAACATATATAGTTGGACAGACACCATTTCTAGAGTTCAGTGTTGTGCTGATGTTGGATGATCTGCAAATAATGTATTATGACTCAACCACATGGAAAGCTGTCTATCGCTCTCACAGTGATTCAAAATACTATGATGAAGATCAAAGTGATGCTGGTGTTGTATTTCAAGACACGTATAATAACTTGAAATCTCGTGATTTTTATGTTAAGGAACACCTAAATCACACAGACGGTATACATGTTCATCAGAGACTTGCTGGATGTGAATTGTTGAATGATGATAAACCAGGTCCACTTCTGAGATTTGATGCCTTTGATGGACAAAATTTGGAGGAGGTGACCTATGATCTGGAAAAAAATGATATCCAGATGAAAAATCCTTGGATAATACCGTGGGACCAAGTGAAACGGCATAATATGAAATTTTTATATGAAAATGTTTGTCATCCTATTTGCATTAAAGTTTTGCGAAGGTACCTGAATATGGAAAAGAACAATGTGATGAGAAAAGTGAAACCCAGAGTCAGACTCATGAAGAAGAAACTCACAGACTCTCAAGGGCTTCAGATCAGCTGTCTGGCCACTGGTTTTTACCCCCGTCACATTAACCTGACTCTGTTCAGAGATGGTCAGCCTGTGGATGATGATCAGATCACAGGAGGAGAGATTCTGCCCAACGGAGACGGAACTTACCAGATGAGGAAGATTTTGGAGATCAGCGCAGAAGAACTACGTGAAGGACACAAATACAACTGCACAATGAAGCACCTCAATCTGGACAACAAACTGGACATTACGTTTGGACGAGGCTCTGAGACGTCAAAGAGTGATTACTCCCTTACTCCATCTTCCACGCAAGATGAAACATGAGTCTAAACAGGCCTATACTAAATTCAAACTTAAAATTAAAAAGCCTTAGCATTTGCTAGGAGATACCATCAGGTTTTGTTATGATAATGACCATCAAGTGATATTTGATTAAAACGACAAAGGAATGTAATATAGTTACACTACAATAACAGATAGTATACAGTATATGCAACATAAAAATTAAGCCTGTTTTTCATTGTTGTTGTTGTTGTTGTTTTGCTTGTCCAAGGTGATCTGTGTTTTATTATTCTGCTGTTCTGTACTGGACACGCAGAACAACTTTACCTTTAGAAAATTGTGATATGGATAATGGCATTTGCTGCAAACATGAAAATGACCATTTAAAGACATGTTTGATTAAAGCGAATATGGGTAGAACTCTTTACTGCCCTATACTTCAGAAATCCTTTTAAAGGTATACGAGTGAAATAAA

Function

NR:

description
nonclassical MHC class I antigen

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000053_03620673_03622682.mRNA True 1414 mRNA 0.38 6 3620240 3622685

Neighbor

gene id symbol gene type direction distance location
CI01000053_03592810_03602102 NA coding downstream 17803 3592655 ~ 3602437 (-)
CI01000053_03558891_03566444 NA coding downstream 50888 3558783 ~ 3569352 (-)
CI01000053_03551506_03551965 NA coding downstream 68044 3550333 ~ 3552847 (-)
CI01000053_03499011_03502122 NA coding downstream 117977 3498398 ~ 3502263 (-)
CI01000053_03456147_03457909 NA coding downstream 162041 3456035 ~ 3458199 (-)
CI01000053_03625343_03653163 NA coding upstream 2285 3624970 ~ 3653334 (-)
CI01000053_03665103_03666630 NA coding upstream 41905 3664590 ~ 3667700 (-)
CI01000053_03696522_03699590 NA coding upstream 73773 3696458 ~ 3699699 (-)
CI01000053_03823296_03825234 NA coding upstream 200409 3823094 ~ 3825328 (-)
CI01000053_04276080_04288879 FAM101A coding upstream 653355 4276040 ~ 4288879 (-)
G227046 NA non-coding downstream 63 3617608 ~ 3620177 (-)
G227069 NA non-coding downstream 13751 3603898 ~ 3606489 (-)
G227047 NA non-coding downstream 73099 3484863 ~ 3547141 (-)
G227225 NA non-coding downstream 78918 3540756 ~ 3541322 (-)
G227049 NA non-coding downstream 129331 3395768 ~ 3490909 (-)
G227236 NA non-coding upstream 13032 3635717 ~ 3636283 (-)
G227051 NA non-coding upstream 83854 3706539 ~ 3707610 (-)
G227071 NA non-coding upstream 106793 3729478 ~ 3729711 (-)
G227053 NA non-coding upstream 111439 3734124 ~ 3745623 (-)
G227563 NA non-coding upstream 341045 3963730 ~ 3965498 (-)
G226963 NA other downstream 622972 2996717 ~ 2997268 (-)
G226826 NA other downstream 1053168 2565892 ~ 2567072 (-)
CI01000053_02225226_02226481 YPELD, YPEL2B, YPEL1, YPELC, YPEL2 other downstream 1382844 2225210 ~ 2226481 (-)
G225812 NA other downstream 2153508 1459595 ~ 1466732 (-)
G227604 NA other upstream 464552 4087237 ~ 4087740 (-)
G228651 NA other upstream 2161798 5784483 ~ 5787690 (-)
G228750 NA other upstream 2308907 5931592 ~ 5932241 (-)

Expression


Co-expression Network